Detailed information on CNT30481056


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30402960Chara brauniiBeta vulgaris65.7225.7983.06301forward
CNT30605231Chara brauniiGossypium raimondii63.977.8383.62293forward
CNT30682285Chara brauniiTriticum urartu63.973.7483.96293forward

Expression of CNT30481056

Peptides detected in this lncRNA

>peptide 1 (61 aa)
MSRXXLANTIPVSPPMVNKKMNPTXNNIGVFNCIEPPHIVVIQLNILISVGTAITMVAAVK*

>peptide 2 (40 aa)
MASDYIFNQMDKTVAGHIASEDPTRCNQRFQIFNVMTIELQ

Sequence

>CNT30481056
ATTGAAGTCCAAAGATTTTGCCTATCCAATAGTAGAATCCTGCAAATAGAGCGAATACGGCTCCCATAGAAAGTACGTAATGAAAGTGTGCTACTACATA
ATAAGTGTCATGTAGAGCAATGTCAAGACYAKAATTAGCTAATACAATTCCAGTAAGTCCTCCTATGGTAAACAAGAAGATGAATCCTACARCRAATAAC
ATAGGTGTTTTTAATTGTATTGAACCTCCCCACATAGTGGTGATCCAACTAAATATCTTGATTTCAGTTGGCACCGCTATAACCATGGTTGCTGCAGTGA
AATAAGCTCGGGTCAATTCAACCACTAGTTTCCTAATGGCATCGGACTATATCTTCAACCAGATGGATAAAACGGTTGCTGGGCATATAGCCTCTGAGGA
TCCTACTCGTTGTAATCAACGATTCCAAATATTCAACGTCATGACAATTGAATTACAA