CANTATAdb - search

Detailed information on CNT30402960

BLAST search results

BLAST vs Swiss-Prot:
sp|P24794|COX1_BETVU, E-value = 1e-93

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30373827	Beta vulgaris	Arabidopsis thaliana	19.97	22.75	91.85	233	forward
CNT30708145	Beta vulgaris	Glycine max	10.97	44.91	89.84	128	forward
CNT30223362	Beta vulgaris	Hordeum vulgare	23.05	60.86	92.57	269	forward
CNT30555227	Beta vulgaris	Oryza glaberrima	63.41	65.03	89.32	740	forward
CNT30437404	Beta vulgaris	Aegilops tauschii	24.68	45.57	93.06	288	forward
CNT30666432	Beta vulgaris	Triticum dicoccoides	11.65	37.57	94.12	136	forward
CNT30314569	Beta vulgaris	Camelina sativa	21.59	15.56	92.46	252	forward
CNT30651680	Beta vulgaris	Rosa chinensis	12.94	32.61	95.36	151	forward
CNT30371457	Beta vulgaris	Oryza glumipatula	63.41	32.41	89.32	740	forward
CNT30481056	Beta vulgaris	Chara braunii	18.17	46.29	84.91	212	forward

Expression of CNT30402960

Peptides detected in this lncRNA

>peptide 1 (29 aa)
MRRSIPESPKKCMGKKVRLTPKIVIQKWI*

>peptide 2 (40 aa)
MSSLELARTIPVSPPTVNKKMNPTANNMGVLYCIEPPPTW*

>peptide 3 (40 aa)
MHGEEGKINPENSDPKMDLTRIFRVCSTKVFAHPIVKSYK*

Sequence

>CNT30402960
AAGCGCGTTGCCCTCCTAGGTGCGCAACACTAAGTAATCCAAGCCAACCCACATTACTGACTAACGGTGGATAATCATATTTCTTAGAGGTACTAAAAAT
AACTCCATGAATTAGCAAAATGAAGGTTGAATTAATGAGAAAGATCTCTGGGGAAACCGCTAAAAAAAGATTGAACATGTGAGAGGATCTGAACGAATTC
CGCTTTCATTTCCCCCATATAGAGCACTGAGTTACTAAGGTTAAGGTCTTCATCCCACAATGAGGTCTTTTCGGAATGCCATGATCTCTTTTTAGAGCGT
AGAAAGGGAGGGAATTCAAAAAAGTCACTCTTTCCAACCTTAGAAAAACAAGAAGTTCTGTTAGGTTCTTAGTTGCTTTTCGTCTCCTTCGTCTCTTTCA
TTTTAAAAAGTTTTCTTTTACTTTAGCTTTTGGTCTCCTTAATAGCTGGAAGTTCTCCAAAAGTGTGAAAAGTTAGGAGGACTTTGTACCATCCATTCCA
GTGTGGTTGAATTCTCTTCAACAGCCCATGGACTTGGATCACATCTTTTGTTCTTTCCACTACTTAAAGTGATTGTTGTTACGACCACGAAGAAACAATA
AATCCCAACTACAGACATATAAGAGCCAAAACTGCTAAGGGCTTCCATCCTGCGTAAGCATCTGGATTATCGGGAATGCGACGTAGCATACCCGAAAGCC
CTAAAAAATGCATGGGGAAGAAGGTAAGATTAACCCCGAAAATAGTGATCCAAAAATGGATTTGACCAGAATTTTTAGGGTATGTTCGACCAAAGTTTTT
GCCCACCCAATAGTAAAATCCTACAAATAAAGCAAAAACGGCTCCCATAGAAAGTACATAATGGAAATGTGCAGCCACATAATAAGTGTCATGTAGAGCA
ATGTCTAGCCTAGAATTAGCCAGGACTATTCCAGTGAGTCCTCCTACGGTGAACAAAAAGATGAACCCTACAGCAAATAACATGGGTGTTTTGTATTGTA
TCGAACCCCCCCCCACATGGTAGCGATCCAACTAAAGAATTTAATTCCAGTGGGGACCGCTATGATCATGGTAGCTGCGGTGAAGTAAGCACGAGTATCA
ATGTCTAAGCCCACAGTAAACATATGATGAGCCCAAACAAGAAATCCAAGAACACCTATACTGATCC