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Detailed information on CNT30478446


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30374380Arabidopsis halleriArabidopsis thaliana39.1128.3596.02201forward
CNT30234302Arabidopsis halleriBrassica oleracea14.7934.2397.3776forward
CNT30312005Arabidopsis halleriCamelina sativa25.6822.687.88132forward

Expression of CNT30478446

Peptides detected in this lncRNA

>peptide 1 (43 aa)
MFLTSPSLSLFSLALVASEVCLFLCLMNTSISALLRLYRECNG*

>peptide 2 (48 aa)
MRVPFAIVDGDALDVVADGIGEEVVLTPPPLVVFLRRSFQRNLRHICS*

Sequence

>CNT30478446
ATCTACTTGTGACAAATTGGCACATGCTATATATTCATTTTTTATGTGCCTCATGTAGATAAAAGATAATCATTGTAACCTGACAATATATACTATTATA
CCAAAACCCCAGTTTCTCTGACATGGGTTATGATAAAGTAAATGTATATTTACCGCATGTGTAGTTCCAAATCTTGATGGCTTCATGAGAGTCCCATTCG
CCATCGTGGACGGTGACGCCTTGGATGTGGTGGCCGATGGCATCGGGGAAGAGGTGGTTCTCACTCCTCCACCGCTTGTAGTGTTTCTCCGCCGATCCTT
TCAAAGGAACCTCCGTCACATATGTTCCTGACGTCGCCATCTCTCTCTCTTTTCTCTCTAGCCTTGGTAGCGAGTGAAGTGTGTTTGTTTCTTTGCTTGA
TGAATACTTCCATTTCTGCTCTCCTTCGTTTATATAGAGAATGTAACGGTTAAAACTTAAAACTTAACATGTCTTTCTTTTTTTTTCCTTTTGAAAATTA
TATTTTACCAAGAT