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Detailed information on CNT30374380


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9ZVF2|ML329_ARATH, E-value = 5e-82

BLAST vs NONCODE:
NONBRAT001098, E-value = 8e-40

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30478446Arabidopsis thalianaArabidopsis halleri29.3440.4796.15208forward

Expression of CNT30374380

Peptides detected in this lncRNA

>peptide 1 (40 aa)
QTIIYLKMILYYANERFKHPYKYTHKGRCMMMMMMMMIGI*

>peptide 2 (48 aa)
MRVPFTVVDSDTLDVVADGIGEEVVLTPPPLVVFLSRSFQWNLRHICS*

>peptide 3 (77 aa)
MYDDDDDDDDRDLGFENMLVHVSNNAFEELHVVARLRRIIGSLLPNHCDLAYDIIGRLLAELIYEIIHFKLLHDVTF*

Sequence

>CNT30374380
CTCAAACCATAATTTATTTAAAAATGATTTTGTACTACGCAAATGAAAGATTCAAACACCCATACAAGTACACACACAAAGGGAGATGTATGATGATGAT
GATGATGATGATGATAGGGATTTAGGCTTTGAGAACATGCTCGTCCATGTCAGCAACAACGCTTTTGAGGAACTTCATGTAGTTGCTAGGCTCAGGCGAA
TCATCGGTTCGCTTCTCCCAAATCATTGTGATCTTGCATACGATATCATCGGGAGACTTTTGGCTGAACTGATATATGAGATCATACACTTTAAGCTGCT
CCATGACGTGACCTTCTAGTCCTCTGAACGTTATCACCATATTCTCATCGTCTATCTCTTTCCTTTCCTTGAACACTTCCGGTTTCCCATCTGCACATAT
ATGCGTACATATTTGTTTCATTCATTAAGTTAGCACCATTCTTTGGATTCCATATAAATGTATTTTTACCGCATGTATAGTTCCAAATCTTGATGGCTTC
ATGAGAGTCCCATTCACCGTCGTGGACAGTGACACCTTGGATGTGGTGGCCGATGGCATCGGGGAAGAGGTGGTTCTCACTCCTCCACCGCTTGTAGTGT
TTCTCAGCCGATCCTTTCAATGGAACCTCCGTCACATATGTTCCTGACGTCGCCATCTCTCTTCCTTGTGTAGCGAGTGAAGTGTGTTTTTTGTTTGTTT
GTTTGTTTC