Detailed information on CNT30473529


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9FRA7|Y5513_ORYSJ, E-value = 2e-32

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30286102Saccharum spontaneumTriticum aestivum13.7835.282.12151forward
CNT30130675Saccharum spontaneumLolium perenne14.9623.681.71164forward
CNT30556972Saccharum spontaneumPanicum hallii12.5931.5188.41138forward

Expression of CNT30473529

Peptides detected in this lncRNA

>peptide 1 (46 aa)
MQTPGRSAQWAPEEGGSGPPKPQRHGALPQAHSGCRAPGPLAPHGQ*

>peptide 2 (47 aa)
HILGCSVGFQNLPSQNQNVPRNFGYQLVYSTKKIGTAIFMAKTMVSL*

>peptide 3 (71 aa)
MVLARQVLVPEPNQTSSSFGQSRSVLGYTPTAKHIHIGYSNCRNTSVKVSPGLYTNSQAHTHWVLKLQKHL*

>peptide 4 (45 aa)
YTFWAVRLGSKICRVKIRTYLEILGINWFIVPKKLVQQFLWPKPW*

>peptide 5 (34 aa)
MGYANTRAIRSVGTRGRRFRATQASAARRSATGS*

Sequence

>CNT30473529
TACACATTTTGGGCTGTTCGGTTGGGTTCCAAAATTTGCCGAGTCAAAATCAGAACGTACCTAGAAATTTTGGGTATCAATTGGTTTATAGTACCAAAAA
AATTGGTACAGCAATTTTTATGGCCAAAACCATGGTAAGTTTATAGAAACTTTTTAAAGCTCACAAGAGAGAAAAGGATATTTGCTATCATATTTTGGCA
CCAGACCAAACACATGCCTTGACTTTTTGCCCTCATTTTCGTCAGCCCTAATTTTGGTTTGTCATGATTTTAGCATGCCATGGTTTTAGCTAGGCAGGTT
TTGGTACCCGAACCCAACCAAACAAGCTCTTCATTTGGTCAGTCAAGGTCAGTCCTGGGTTACACACCAACAGCCAAGCACATACACATTGGGTACTCAA
ATTGCAGAAACACTTCAGTCAAGGTCAGTCCTGGGTTATACACCAACAGCCAAGCACATACACATTGGGTACTCAAATTGCAGAAACACTTGTAATGAAC
CAAGTACACCCCAATGTCAGAGCCAGATATAAAAACTGATGACAAAGAACAATCATCAACATTGCTATAGAATTTAATAGATACCCATTAATGTACAAAT
CATTATCCATAGAACAAAGATAAACTTGTGTAGGCTCATTGCAAGTTGTAACAAGAAGCAATGCCACCACACTAAACCACGCATGCAAGCTCTAGTTTAC
CATAGGATACACAAAAACATAACACAGTAATACTTGCTACACCACATCACAGGGTTTATACTTGATATAATTGATTATGTAGTTTCCATTCCATTTCATC
TCCTACTGGGAGGGGATAGGCTGCATCTCTGGTGCTGGGGCAACGTCAGCCATGGGGTATGCAAACACCCGGGCGATCCGCTCAGTGGGCACCAGAGGAA
GGCGGTTCAGGGCCACCCAAGCCTCAGCGGCACGGCGCTCTGCCACAGGCTCATAGCGGGTGTAGAGCTCCCGGGCCTTTGGCTCCGCACGGGCAATAGC
TGACTTGGCAAGGCCTGTGGCCGTGCCCACCAGGCCGGCCTGGCGAACCTCCTTTGCAGCTGAGCAGGCAAGTGTGGGGGCTTCCTTCACCACTGG