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Detailed information on CNT30468712


BLAST search results

BLAST vs Swiss-Prot:
sp|P27787|FER1_MAIZE, E-value = 5e-50

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30366929Saccharum spontaneumSorghum bicolor22.7744.9997.73220forward
CNT30102959Saccharum spontaneumOryza rufipogon15.4220.1987.25149forward

Expression of CNT30468712

Peptides detected in this lncRNA

>peptide 1 (87 aa)
MITSLFGPYIAWCMLCLADEVLLLVRLDDDVGGGVGGAGEHPPAFDLGVVEEALVGLVDGAGDDLAGAGGAGAGARRLLLRAVAIGL*

>peptide 2 (30 aa)
MPSSSAWSRMYTSSGTCSSTSPSGVMSFTL*

Sequence

>CNT30468712
TAGAAATTGAACTCCAGTCTATTGTACATGTGTTATTCTCACTCGTATGGGTACATGAGGTTCATGGACTAGGCATATATTAAGACTGAATTTTGGTACG
TTCAGTTAAGTATGTAGTGTATATACACATATATAGTAGCACAAATAAAACTGAAGAGGAATAAAAACATTATTATTTGACTTGCTTGAGCAGTGAAACT
CATATATCATATCATGCATCCACAGTAAAACTGGTAGAGACCAATAAATAACAGAGAGCTGCTGTCATGGATGCATGATAACTAGCTTGTTTGGCCCATA
CATAGCGTGGTGCATGCTCTGCTTAGCCGACGAGGTCCTCCTCCTTGTGCGTCTCGATGACGACGTCGGAGGTGGGGTAGGCGGCGCAGGTGAGCACCCA
CCCGCCTTCGATCTGGGCGTCGTCGAGGAAGCTCTGGTCGGACTGGTCGACGGTGCCGGAGACGACCTTGCCGGCGCAGGAGGAGCAGGAGCCGGCGCGC
GGAGGCTGCTGCTCAGGGCGGTGGCCATTGGACTGTAGTGTGTGATTGCTATAGCTAAGGAAGCTCTGGTCGGACTGGTCGACGGTGCCGGAGACGACCT
TGCCGGCGCAGGAGGAGCAGGACCCCGCGCGGCAGGAGAAGGGCAGGTCGATGCCTTCCTCCTCGGCCTGGTCCAGGATGTACACGTCGTCGGGCACCTG
CAGCTCCACCTCCCCGTCCGGCGTGATGAGCTTCACGTTGTAGGTGGCCTGCGCGCGCAGCCTGGCGCCGCGGGCCGGCTTGGCCGCGGGCAGCGCCACG
ACGGTGGCCACCGGGGCGGCGGCGAGGCCGAGGGAGAAGGCCGGCGCGCGGAGGCTGCTGCTCAGGGCGGTGGCCATTGGACTGTAGTGTGTGATTGCTA
TAGCTGGTAGCTGCTGCAGCAGAAGCTGGGTAGCGACAATGGAGTGTTTTGTTTGCTCTGCTACAG