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Detailed information on CNT30102959


BLAST search results

BLAST vs Swiss-Prot:
sp|P00228|FER_WHEAT, E-value = 3e-32

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30675647Oryza rufipogonSetaria viridis20.632.4890.79152forward
CNT30523440Oryza rufipogonSetaria italica20.621.3891.45152forward
CNT30304725Oryza rufipogonTriticum aestivum19.2423.3292.96142forward
CNT30399164Oryza rufipogonTriticum turgidum19.2420.5592.96142forward
CNT30442771Oryza rufipogonAegilops tauschii19.2424.1593.66142forward
CNT30248543Oryza rufipogonAvena sativa18.9736.6587.14140forward
CNT30670303Oryza rufipogonTriticum dicoccoides19.2423.8392.96142forward
CNT30468712Oryza rufipogonSaccharum spontaneum20.1915.4287.25149forward
CNT30140637Oryza rufipogonLolium perenne19.2421.1688.73142forward
CNT3010833Oryza rufipogonZea mays19.2421.0189.44142forward
CNT30683609Oryza rufipogonTriticum urartu19.2426.8992.96142forward
CNT30351013Oryza rufipogonEragrostis tef19.2422.7990.14142forward
CNT30596694Oryza rufipogonOryza meridionalis95.884.0791.51707forward
CNT30584448Oryza rufipogonEchinochloa crusgalli20.3318.1690150forward
CNT30117323Oryza rufipogonOryza nivara53.5251.8499.49395forward
CNT30595007Oryza rufipogonEragrostis curvula19.2420.7390.85142forward
CNT30558188Oryza rufipogonPanicum hallii19.2422.492.25142forward

Expression of CNT30102959

Peptides detected in this lncRNA

>peptide 1 (72 aa)
MYTSSGTCSSTSPSGVISFTLYVACIRSLSPSLLLAGSTDTRAGAGAVATRRDIGNRTWLLSAVAAMAAIAN*

Sequence

>CNT30102959
GCTTATTAATTAACTGTTCTTTCAAATACATGGAGTACGTATTTGACAGTAGTATATATGACACCAAAATGTGATATGGATATGATTAAGCAGGTGCAGC
AAAACGTACATTAATTAAACAACAACAATTAACCCTCGGGCACGCCTGTGTTTTGTTATCTCGCTCAACATATACGTACGTAATACTTTGCTTGCATAGC
ATAGGGACGACGACATTATATTCTTAATTGATAAACTCAAGAACGCATGGAGATGGATCGAGAGATTTATAAATATGGAGCTTGCTTGATTGATTAGATG
AGGTCGTCCTCCTTGTGGGTCTCGATGACGACGTCGGACTTGGGGTAGGCGTGGCAGGTGAGGACCCAGCCGGCGGCAACCTGGTCGTCGTCGAGGAAGC
TCTGGTCGGACTGGTCGATCTCGCCGGAGACCACCTTGCCGGCGCAGGTCGATCCCTTCCTCCTCCGCCTGGTCCAGGATGTACACGTCGTCCGGCACCT
GCAGCTCCACCTCGCCGTCCGGTGTGATCAGCTTCACGTTGTACGTCGCCTGCATCCGCAGCCTGTCTCCCAGCTTGTTGCTCGCCGGCAGCACCGACAC
GCGCGCCGGCGCCGGCGCCGTCGCCACCCGCAGGGACATCGGCAACCGGACCTGGCTGCTCAGTGCCGTCGCCGCCATGGCTGCTATAGCTAATTAAGCT
AGCTAGCTGCTGCTGCTAGGTAAGGTAGACGAGGAGGA