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Detailed information on CNT30366929


BLAST search results

BLAST vs Swiss-Prot:
sp|P00228|FER_WHEAT, E-value = 1e-27

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30695475Sorghum bicolorOryza sativa33.5424.7793.9164forward
CNT30668240Sorghum bicolorTriticum dicoccoides35.7929.4189.71175forward
CNT30468712Sorghum bicolorSaccharum spontaneum44.9922.7797.73220forward
CNT3011967Sorghum bicolorZea mays44.7935.6194.52219forward
CNT30596694Sorghum bicolorOryza meridionalis29.0416.8892.25142forward
CNT30102906Sorghum bicolorOryza rufipogon22.0913.995.37108forward
CNT30551540Sorghum bicolorOryza brachyantha37.2222.4491.21182forward

Expression of CNT30366929

Peptides detected in this lncRNA

>peptide 1 (94 aa)
MACGCLLADEVLLLVRLDDDVGDDLAGAGGAGPRAAGEGEVDPFLLGLVQDVHVVGHLQLHLPVRRDQLHVVRGLRAQPGAAGRLGRGQRHHGGG

>peptide 2 (77 aa)
MTTSETTLPAQEEQDPARQEKGRSIPSSSAWSRMYTSSGTCSSTSPSGVISFTLYVACARSLAPRAGLAAGSATTVAA

Sequence

>CNT30366929
AAAAAACATTATTATTTGATTTGCTTGAGCATAGTGAAACTCATATATCATATCATGCATCCGAAGTAAAATTGGATTATAAATAAGAGAGTAGTATAAC
AGATGATGATGCATGGAGCTGTGCTGCTGTCATGGATGGATGCATGGCATGGTAGCTAGCTAGCTTGCTTGGCCCATACAGATCGTGTGGTGTGTGGTGT
GCATGGCATGCGGCTGCTTATTAGCCGACGAGGTCCTCCTCCTTGTGCGTCTCGATGACGACGTCGGAGACGACCTTGCCGGCGCAGGAGGAGCAGGACC
CCGCGCGGCAGGAGAAGGGGAGGTCGATCCCTTCCTCCTCGGCCTGGTCCAGGATGTACACGTCGTCGGGCACCTGCAGCTCCACCTCCCCGTCCGGCGT
GATCAGCTTCACGTTGTACGTGGCCTGCGCGCGCAGCCTGGCGCCGCGGGCCGGCTTGGCCGCGGGCAGCGCCACCACGGTGGCGGCCG