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Detailed information on CNT30451077


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONZMAT001532, E-value = 2e-53

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT303176Saccharum spontaneumZea mays38.0443.6191.17283forward
CNT30363026Saccharum spontaneumSorghum bicolor24.7373.3196.2184forward
CNT30496380Saccharum spontaneumDigitaria exilis36.1668.9783.64269forward

Expression of CNT30451077

Peptides detected in this lncRNA

>peptide 1 (76 aa)
MCYRSFKQKSITSLSQPPTGSTPSDRPSKLALDPHLLVKHKEENHKRVFQQSLCSTNMLSRSLSSASLQKDYALPC*

>peptide 2 (59 aa)
MIFNRRVVMPESLQRRGQPSYFGRVLCSKKNLQFTNAKRKLFIHPPAKLTLVRVRTRTDL

>peptide 3 (32 aa)
MLKKKFAIHKREEEIIHSPTSQTDLGEGKNTD*

>peptide 4 (42 aa)
MLIDHYIFAVSPPEPASFLMASFFICCPSIYSVATSCWQSHG*

Sequence

>CNT30451077
CCCTCGACGGAAAAGCCATGGCTGAAAGTACTGTTTGCTGATTTGTTGTGAGAGAAAAACACTGTTCATTGGCTGAAAAAGTACGGCTTATAAGACAAGC
AAACAGGGCCTATGCAATGCTTTTGCAGGGTACAACTGCACAGTCCCCTTGTAGCAGTATGATCAGCTAGTGCTATACCTCTTCCCTTCCTTTTTATAAT
CAGTTTTGATCAATAATGTGCTATAGATCTTTTAAACAAAAGTCTATCACTTCGCTTTCTCAACCACCAACAGGTTCCACACCAAGTGACAGACCAAGTA
AGCTTGCACTAGATCCCCATTTGCTAGTGAAGCATAAAGAAGAGAACCATAAAAGGGTGTTCCAACAAAGTTTGTGCTCAACGAATATGCTAAGTAGATC
CCTTTCCAGTGCGAGCCTACAAAAGGACTATGCTCTCCCATGTTAATCGACCATTACATCTTTGCAGTATCACCACCTGAGCCAGCCTCATTTCTCATGG
CCTCCTTCTTCATCTGCTGTCCGTCAATCTATTCTGTGGCCACATCTTGCTGGCAAAGCCATGGATGATCTTCAATCGCAGGGTGGTCATGCCTGAAAGC
CTACAGCGCAGAGGGCAACCTAGCTACTTTGGCAGAGTCTTATGCTCAAAAAAAAATTTGCAATTCACAAACGCGAAGAGGAAATTATTCATTCACCCAC
CAGCCAAACTGACCTTGGTGAGGGTAAGAACACGGACTGACCTG