CANTATAdb - search

Detailed information on CNT303176

BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONZMAT001532, E-value = 4e-171

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30451077	Zea mays	Saccharum spontaneum	43.61	38.04	91.17	283	forward
CNT30363026	Zea mays	Sorghum bicolor	27.73	71.71	90	180	forward

Expression of CNT303176

Peptides detected in this lncRNA

>peptide 1 (31 aa)
MIFDRRVVMPESLQRRGQPSIFGRVLYVSFN*

>peptide 2 (35 aa)
MMSMSTVKSTLDSVATLFNFTSEIMRSVHLGNLAI*

>peptide 3 (52 aa)
MLSHAIDHYIFAVSPPELASFIMASFISCPSIYSVATCGKAMDDLRSQGGHA*

>peptide 4 (53 aa)
MLSRSLSSASLQKDHALPCYRPLHLCSITARASLIYHGILHQLSVNLFCGYMW*

Sequence

>CNT303176
TAAAAGGTTCCAACAAGTTTGTGCTCAAAGAATATGCTAAGTAGATCCCTTTCCAGTGCGAGCCTACAAAAAGACCATGCTCTCCCATGCTATCGACCAT
TACATCTTTGCAGTATCACCGCCAGAGCTAGCCTCATTTATCATGGCATCCTTCATCAGCTGTCCGTCAATCTATTCTGTGGCTACATGTGGTAAAGCCA
TGGATGATCTTCGATCGCAGGGTGGTCATGCCTGAAAGCCTACAGCGCAGAGGGCAACCTAGCATCTTTGGCAGAGTCTTGTATGTCTCCTTCAATTGAT
TATGGGTATACTACAGCTTGTCCTGAACTCATGTACTGTTGTCAACTTCTATATTACTAAAGAGTAATGAACTGATTATCACTTCTTTGAAACTCATTAT
ATTGTCTATTGTTGTTTTGTCCCTATGTGTGATTGTAATAGAGACTTGTGGTATTGAGAGATTAAAGCCCAAAAGTTAGCTTATTAAAACTTTTCGGTGA
TATCGCTAAGAAAATTAAAATGATGAGTATGTCTACCGTGAAAAGCACTCTAGACAGTGTGGCAACTCTCTTCAACTTTACTTCTGAGATCATGAGATCA
GTCCACCTTGGCAATCTCGCCATCTAATAACCTTTTAGGAACAACCTTA