Detailed information on CNT30363026


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONZMAT001532, E-value = 1e-51

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30451077Sorghum bicolorSaccharum spontaneum73.3124.7396.2184forward
CNT303176Sorghum bicolorZea mays71.7127.7390180forward
CNT30496380Sorghum bicolorDigitaria exilis65.3442.0582.93164forward

Expression of CNT30363026

Peptides detected in this lncRNA

>peptide 1 (75 aa)
FAVSPPERSLISHGLLHLLSANLFCGHILLAKPWMIFNRRVVMPESLQRRGQPSNFGRVLVVGTGEDSFLASLAL*

>peptide 2 (34 aa)
LQYHHLSAASFLMASFICCPPIYSVATSCWQSHG*

Sequence

>CNT30363026
CTTTGCAGTATCACCACCTGAGCGCAGCCTCATTTCTCATGGCCTCCTTCATCTGCTGTCCGCCAATCTATTCTGTGGCCACATCTTGCTGGCAAAGCCA
TGGATGATCTTCAATCGCAGGGTGGTCATGCCTGAAAGCCTACAGCGCAGAGGGCAACCAAGCAACTTTGGCAGAGTCTTAGTAGTGGGAACAGGTGAAG
ACAGTTTTTTAGCTTCACTAGCTCTGTGAGAAGAGGAGAAAGATTAGAAAA