Detailed information on CNT30450840


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT3012766Saccharum spontaneumZea mays92.7515.4691.9358forward
CNT30362708Saccharum spontaneumSorghum bicolor65.5453.3894.86253forward

Expression of CNT30450840

Peptides detected in this lncRNA

>peptide 1 (67 aa)
TEPYRAAPICPQRRRFVGLPRRTRRAEPGSPLSKPLAREKHVSAGGMATRPGRLQRRRGGYCAVPFG*

>peptide 2 (38 aa)
DRTLPRCPNMPPAAAVRRAPSPDAAGGARLAAEQASGP*

>peptide 3 (32 aa)
GPNPTALPQYAPSGGGSSGSLAGRGGRSQARR*

>peptide 4 (31 aa)
MSPQEAWQRALVDCNGGEEVIVLFHLAEFGS*

Sequence

>CNT30450840
GGACCGAACCCTACCGCGCTGCCCCAATATGCCCCCAGCGGCGGCGGTTCGTCGGGCTCCCTCGCCGGACGCGGCGGGCGGAGCCAGGCTCGCCGCTGAG
CAAGCCTCTGGCCCGTGAGAAGCATGTCTCCGCAGGAGGCATGGCAACGCGCCCTGGTAGATTGCAACGGCGGAGAGGAGGTTATTGTGCTGTTCCATTT
GGCTGAGTTTGGAAGTTAATGGTGGTTGAGTGCAAGAAAAGAAATATAACTAACACTGTAAAGATCGAGGGATATAGAAACAGAACTAATTGGCACTAAT
GATGAAAACAATCTCATGACTCGTGAAAGGTAGCTTCTACCTCCCTCATCTATTATATGGTTTCCTGGAAGACTGCTAACAGGCGG