Detailed information on CNT30362708


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30450840Sorghum bicolorSaccharum spontaneum53.3865.5494.86253forward

Expression of CNT30362708

Peptides detected in this lncRNA

>peptide 1 (68 aa)
PHRARPCPHCPSAGGLPRRTRRAEPPAEPGSLWSKPLAREKHVSAGGTAARPGRLQRRKGGYCAVPFG*

>peptide 2 (73 aa)
NPTARVHAPTAPAPAGSLAGRVGRSHRRSQARCGASLWPVRSMSPQEARQRALVDCNGGKEVIVLFHLAEYGS*

>peptide 3 (39 aa)
TPPRASMPPLPQRRRAPSPDASGGATGGARLAVEQASGP*

Sequence

>CNT30362708
AACCCCACCGCGCGCGTCCATGCCCCCACTGCCCCAGCGCCGGCGGGCTCCCTCGCCGGACGCGTCGGGCGGAGCCACCGGCGGAGCCAGGCTCGCTGTG
GAGCAAGCCTCTGGCCCGTGAGAAGCATGTCTCCGCAGGAGGCACGGCAGCGCGCCCTGGTAGATTGCAACGGCGGAAAGGAGGTTATTGTGCTGTTCCA
TTTGGCTGAGTATGGAAGTTAATGGTGGTTGAGTGCAAGAAAAGAAATATAACTAACACTGCAAAGATCAAGGGATATAGAAACAGAGCTAATTGCCACT
AGTGATGAAAACAGTCTCATGACTCGTGAAAGCTTGATGGTCACTGCTTGCTGACTAGTTTCAGACTGTTGGGTGCTCTAAGGGCAGCAAGAGGGCTTCT
CTAGAAAGTGAGGTACAGACTTAAGACAACCTCCCATTCCTGATCAGGAACATGTGTTAATTAAAAAAAATCCT