« Back to Aegilops tauschii search


Detailed information on CNT30440419


BLAST search results

BLAST vs Swiss-Prot:
sp|P25875|RR16_HORVU, E-value = 2e-42

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30393155Aegilops tauschiiTriticum turgidum61.110098.15647forward
CNT30258856Aegilops tauschiiAvena sativa54.6776.7993.96579reverse complement
CNT30665681Aegilops tauschiiTriticum dicoccoides83.1100.1197.73880forward
CNT30229322Aegilops tauschiiAnanas comosus8.7839.4192.4793reverse complement
CNT3068216Aegilops tauschiiLeersia perrieri15.1139.1283.75160reverse complement
CNT30127870Aegilops tauschiiCorymbia citriodora19.0736.2789.6202forward
CNT30685543Aegilops tauschiiTriticum urartu22.7687.9699.59241forward
CNT30150933Aegilops tauschiiBrachypodium distachyon24.3696.9996.51258forward

Expression of CNT30440419

Peptides detected in this lncRNA

>peptide 1 (39 aa)
CMRIHARGTPLSFERSVGGKIEYGVRIKRPIYLQILFVQ*

Sequence

>CNT30440419
TGTATGAGAATACATGCAAGAGGAACACCCTTATCATTTGAGCGAAGTGTAGGCGGAAAAATTGAATATGGAGTGAGGATAAAGAGACCCATCTATCTAC
AAATTCTATTTGTTCAATAGACCTTTGTCAATGGAAATACAATGGTAAGAAAACAAATTAGATAGAAAAAGTAAATAAAATAGGGGCTTATGTTGAATTG
GCACGATATAATATAAATCCAAATAGGATTAAAAAAGAGGTAAATTGTGTCTAAATAATTAGACAACTAGGAATACTAATAATCTTCTCCTATCCTACTT
TTTGATTCATTTAGTTCTTCAATTAACTCAAAGTTCTTTCTTTTTCTTTAAAGAATTCCGCCTTCCTTAAAATATCATAAACAGTTCTTGTTGGTTGAGC
ACCCTTTTCAAGGAAATAGAGAATAGCTGGAACATTTAAACAAGTTTGATTCTTTATCGGATCATAAAAACCTACTTTTTGAAGATCTCTTCCTTCTCTT
CGAGATCGAACATCAATTGCAACGATTCGATAGACAGCTTATTGGGATAGATGTAGATAAACAACGCCCCCCCTAGAAACGGATAGGAGGTTTTCTCCTC
ATACGGCTCGAGAAAATGATTCGAATTTCTGTCGATAATAATAGAAATTAGACTATGACGTGCATTAATTTCCTTACATAAAAAACAAATTTCATTTATA
CTCATGACTCAAGTGGGCTAATTTTGCCTGACAAACTTCGAAGGCAAAATCCTTCCAAAAAATTTGAGTCGTCTTTAAACTCTTTTCTTTTTCTCATTTC
GAACAAATTGACTTTTATTCCTTATTATGATCCAACTCTGTTGTTGAGACAATTGAAAATTGTGTTTACTTGTTCTGGAATCCTATATCTTTGATTTGTG
AAATCCTTGGGTTTAGACATTACTTCGGGAATTCCTATTTTTTTTCTTTCAAAAGAGTAGCAACATACCCTTTTTTCTTATTTCCTTCGATAAAGCATTT
ATCTCTTCTATAGAAATCTAATAAGAGGGATTGATTCTGAAATACTTTTATTGGACTTT