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Detailed information on CNT30393155


BLAST search results

BLAST vs Swiss-Prot:
sp|Q95H63|RR16_WHEAT, E-value = 4e-43

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30696483Triticum turgidumOryza sativa50.5415.296.64327forward
CNT30277302Triticum turgidumChenopodium quinoa29.6833.6884.38192forward
CNT30727992Triticum turgidumCorchorus capsularis27.0526.9289.71175forward
CNT30440419Triticum turgidumAegilops tauschii10061.198.15647forward
CNT30258856Triticum turgidumAvena sativa67.5457.9695.19437reverse complement
CNT30665681Triticum turgidumTriticum dicoccoides96.1470.7697.75622forward
CNT30610242Triticum turgidumGossypium raimondii25.6640.2989.16166forward
CNT30229322Triticum turgidumAnanas comosus14.3739.4192.4793reverse complement
CNT3068216Triticum turgidumLeersia perrieri24.1138.1484.62156reverse complement
CNT30655380Triticum turgidumRosa chinensis25.1919.8388.96163forward
CNT30127870Triticum turgidumCorymbia citriodora31.2236.2789.11202forward
CNT30685543Triticum turgidumTriticum urartu37.2587.9698.76241forward
CNT30424174Triticum turgidumPapaver somniferum27.0533.7289.71175forward
CNT3058916Triticum turgidumAmborella trichopoda27.28.5686.36176forward
CNT30150933Triticum turgidumBrachypodium distachyon39.5796.2496.48256forward
CNT30576782Triticum turgidumOryza barthii38.3324.1796.37248forward

Expression of CNT30393155

Peptides detected in this lncRNA

>peptide 1 (35 aa)
TTRNTNNLLLSYFLIHLVLQLTQSTFFFFKEFRLP*

Sequence

>CNT30393155
ACAACTAGGAATACTAATAATCTTCTCCTATCCTACTTTTTGATTCATTTAGTTCTTCAATTAACTCAAAGTACTTTCTTTTTCTTTAAAGAATTCCGCC
TTCCTTAAAATATCATAAACAATTCTTGTTGGTTGAGCACCCTTTTCAAGGAAATAGAGAATAGCTGGAACATTTAAACAAGTTTGATTCTTTATCGGAT
CATAAAAACCTACTTTTTGAAGATCTCTTCCTTCTCTTCGAGATCGAACATCAATTGCAACGATTCGATAGACAGCTTATTGGGATAGATGTAGATAAAC
AACGCCCCCCCTAGAAACGTATAGGAGGTTTTCTCCTCATACGGCTCGAGAAAATGATTCAAATTTCTGTCGATAATAATAGAAATTAGACTATGACGTG
CAGTAATTTCCTTACAGAAAAAACAAATTTCATTTATACTCATGACTCAAGTGGGCTAATTTTGCCTGACAAACTTTGAAGGCAAAATCCTTCCAAAAAT
TTTGAGTCGTCTTTAAACTCTTTTCTTTGTCTCATTTCGAACGAATTGACTTTTATTCCTTATTCTGATCCAACTCTGTTGTTGAGACAATTGAAAATTG
TGTTTACTTGTTCTGGAATCCTTTATCTTTGATTTGTGAAATCCTTG