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Detailed information on CNT30396439


BLAST search results

BLAST vs Swiss-Prot:
sp|P69310|UBIQ_AVESA, E-value = 4e-37

BLAST vs NONCODE:
NONSTUT000620, E-value = 2e-21

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30243951Triticum turgidumAvena sativa42.8834.0692.77235forward
CNT30667964Triticum turgidumTriticum dicoccoides58.5859.4496.57321forward

Expression of CNT30396439

Peptides detected in this lncRNA

>peptide 1 (38 aa)
MRRCWSGGMPSLSWILALTLSIVSDDSTSRVMVLPVNVF

>peptide 2 (72 aa)
MQSQRATTVISLLVVKTGRNKPEETFNKHIGSNSLIHTKPYQQLFPRNQHTSSGLMVHQTRYSRLNTNKTQD*

Sequence

>CNT30396439
TTCCAAGATAAAAGAAACATCGATATATAACTTGAAAAATCTAATGATTTCACAGGAACATTGAGAGCTACAGCCCATAAAATGCAATCACAGAGAGCCA
CTACGGTGATATCACTGCTAGTTGTAAAAACTGGAAGAAACAAACCAGAAGAAACATTCAACAAGCATATTGGTTCAAATTCACTTATTCATACCAAACC
ATACCAGCAACTGTTTCCCCGAAACCAACACACATCATCAGGACTCATGGTCCATCAAACCAGATACAGTAGACTTAACACGAACAAGACACAGGACTAA
TAGCAGCAGGTCCAACGTCAGGGCAATTACTGACCACCACGGAGGCGGAGCACCAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCAAGGGTCC
TGCCATCCTCAAGCTGCTTGCCAGCGAAAATGAGACGCTGCTGGTCCGGAGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGACATTGTCGATTGTGTC
AGACGACTCGACCTCAAGGGTGATGGTCTTGCCAGTCAATGTCTTCAC