« Back to Zea mays search


Detailed information on CNT30383


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30469276Zea maysSaccharum spontaneum31.728.8486.74445forward
CNT30366517Zea maysSorghum bicolor60.7533.1686.05853reverse complement

Expression of CNT30383

Peptides detected in this lncRNA

>peptide 1 (56 aa)
MAPVVLLNSLHQNQNTGHASQISGAFGLVYIYTINGSLIVFLTNPTLKAIYKRFAF*

>peptide 2 (44 aa)
MIALKNNLAIIGKTTPTVVWFRIRNLSSNRLENPRGYFIILRLI*

>peptide 3 (34 aa)
SWLLLFCLTPYIRIKIQDMPVKFLVLLAWSTFTL*

>peptide 4 (30 aa)
MVWMQFFWSRKQISMFPLLYCSMQLKLDGS*

Sequence

>CNT30383
TCATGGCTCCTGTTGTTTTGCTTAACTCCCTACATCAGAATCAAAATACAGGACATGCCAGTCAAATTTCTGGTGCTTTTGGCTTGGTCTACATTTACAC
TATAAATGGCAGTTTAATAGTTTTCCTTACAAACCCTACTCTTAAGGCAATTTACAAGAGATTTGCCTTTTAGAAAACCTGTGTTTAGGTACTAGTGTAC
TACCTAATGCAGACAGACCACATATGTTAGCTAAACCACAGTAAATTTGGTCGCTAACTATTTTTCTTACTCTGATTCAGTAATACATGCTACGACCAAA
ATATATTAGTGACATTGAACATTGAACTTGTTGACTTATTAATCACCCAACGTTTAATTCTGAGTGCATTTTTGCGCTTACGCATTACACATATGAAAGT
TTTCAAATGTAACATTTGCAGGTATTGTCTAAATGAAACTTTGTGCAAAGAAAATAGTTGAGATATTTGATTCATATTATTAGTTAGATCTGAACTTTTG
TTGGTAATTTTTCTGTTGCCAGCTGTGTTACTAGTTTTTTTTTCTTTGTAGTATTGTTACATTATCAATTTTAGCTCGAACCATATCCTCCACCAAAAAT
GGTTTGGATGCAGTTCTTTTGGTCAAGAAAACAAATCAGCATGTTCCCTCTGCTGTATTGTTCAATGCAACTGAAGTTAGATGGTTCTTAGACTTTTAAG
GAGAGGGACTACAGTTGTGTCTTCAAATGACAGTTTCATAACTACATAAATATTTCTTTACCAACTTAAATGTCTTCTAGATAATTTCTCTACTGCACTT
AGTTGCAGCAATCAGAATCCTTTGCCACATCGATGAGGATATATGATAGCCTTGAAGAATAATTTGGCTATAATTGGGAAAACCACTCCCACGGTGGTAT
GGTTTAGAATAAGAAACCTGTCTTCCAACCGACTGGAAAATCCCCGTGGCTATTTTATCATTTTAAGGCTAATTTAGGAACCCCATTTTCCTAAGAGATT
TCTATTTTTCTAATAGAAATTAGTTCATTCTTGGAAAAATAGAAATCCCTTGGGAAAATAGAGTTCCCAAACTAGCCGTTATGCGTTGCTAGCGAGAGTG
TATTTTTAACTACCTTTAGGGCTAGTTTGGAAACTCAAATCCTCTCCGGCATTTGAGGGGATTGAGGTGAAAATGAACTAGTTTCCCTCTCATTCTTCTC
CAATTGCAGAGGGGATTTAAGTTTCCAAACTAGCCCTTAAATTTGCTGGCATGGTCAACGAGGGTATATATTTAACTACCCTTAAATTTGCTGCCATGAT
GAGTTGAATCTAGGTACTGGAGTCAACTACTAGGGCACTTAGCTATGGATCCTTCTGTATATATGACAGCCTTTTTTGTTGTTTGGTCCTGATATTAGAG
TGTT