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Detailed information on CNT30380741


BLAST search results

BLAST vs Swiss-Prot:
sp|P18212|PSBP2_TOBAC, E-value = 1e-16

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30278100Manihot esculentaChenopodium quinoa28.6717.384.8886forward
CNT30525117Manihot esculentaPhaseolus vulgaris23.6723.6785.9271forward

Expression of CNT30380741

Peptides detected in this lncRNA

>peptide 1 (77 aa)
ITSFTIGSICRSNFGANGCSTNEYSESQSSGDKGNIVLLWRLLVGGTADEGLGVARDLTLLGRQPIRGGELQRCLQE*

>peptide 2 (41 aa)
MAAAPMSTVRANLLETRATSSSCGGCLWVARQMKVLVLLET*

Sequence

>CNT30380741
ATTACCAGCTTCACCATAGGCAGCATCTGCAGGAGCAACTTTGGAGCCAATGGCTGCAGCACCAATGAGTACAGTGAGAGCCAATCTTCTGGAGACAAGG
GCAACATCGTCCTCCTGTGGAGGCTGCTTGTGGGTGGCACGGCAGATGAAGGTCTTGGTGTTGCTAGAGACTTGACGCTGCTGGGAAGACAACCTATTAG
GGGTGGTGAGTTGCAGAGATGCCTGCAGGAGTAGGATGAAAATAATGGATGTAGAAATTCGAGCTGCAAATTGCTTTAGGTGATTTGCTTTTGGGGTATG