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Detailed information on CNT30380377


BLAST search results

BLAST vs Swiss-Prot:
sp|O49954|GCSP_SOLTU, E-value = 2e-41

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30631068Manihot esculentaVigna unguiculata15.5925.2385.51138forward
CNT3073588Manihot esculentaBrassica juncea20.3416.9578.89180forward
CNT30570509Manihot esculentaVitis vinifera20.928.9181.08185forward

Expression of CNT30380377

Peptides detected in this lncRNA

>peptide 1 (55 aa)
MAALVVALLGFTQQPLQDSPVSQTPCTFHECDVERKKVFFLLFLWLNQQKEERGW*

Sequence

>CNT30380377
TGCGCAGAGCAGATATCAATAGTTTGTGGGTGACAGTTGCTAGCAATAATAAAAGTCTTTTTCTTCCCTTTTAGGATATTATTGCACATAGCCATAGCCT
CAGCAGCAGCAGTCCCTTCGTCGAGCAATGAAGCATTCGACATGGGCAATCCAGTGAGATCCGTAATCATGGTTTGATAATTAAGCAAGGACTCCAACCT
CCCCTGAGATATCTCAGCTTGATAAGGAGTGTACAATACAGGAGAAGAAGAGTTCAACAGAGTTGAAGACTCATGGCAGCTCTGGTGGTTGCATTGCTTG
GATTCACTCAGCAGCCTCTTCAAGATAGCCCTGTTAGCCAGACGCCTTGCACGTTCCATGAATGTGATGTAGAGAGAAAAAAAGTGTTCTTTCTCCTCTT
TTTGTGGCTAAACCAGCAGAAAGAGGAGAGGGGTTGGTGAAGAAAAAATAGAAAGAGTTTCAAGAATGGGATTATTTCTACTCCACGAAACGAGTGGAGA
AATGGGCTGGTGATAACACAGTGAATTTTTGTCCGTGTATAATTATTATATATACTAGTTGCATATACATAAATGAAAAAAAAAAAATTATGGGTTCAAG
ATCTGGTGGTGGTGGGTGACTGAGCAACTCTGAAGAAAAGGACAGATTTTTTTGAGAATATCACCATCTGCAAAACAAAAGGTCACCAAATCTCCAAAAA
ACAGAAAAATGAATGGAAGTAATTGAAGCAAAACAGATTGAGTATCAATGGATCAAAATAATTCCCATTTTCTTTCATTCGAAGATAAAGAAGTAAGAAA
ATTTTGATTTTTTTCCTTGAACAATGTAATCTGAGATTCTGCGGTGGCAGAATCTCTTTCACACCCTGCCTATCTCCTATGTCTT