Detailed information on CNT30369060


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30450517Sorghum bicolorSaccharum spontaneum54.7289.2695.1673forward
CNT30557129Sorghum bicolorPanicum hallii54.5594.7791.8671reverse complement

Expression of CNT30369060

Peptides detected in this lncRNA

>peptide 1 (49 aa)
MDFSRRRGRRTAFVAAIRTLHRTIQSVGATGGVYKGQGRSQRELMTRAY*

>peptide 2 (49 aa)
FPSRYLFAIGLSPVFSLGRSLPPDLGCIPKQPDSLTAPRGAAGSGLQFR*

>peptide 3 (71 aa)
MLKLSGWSRLTWVSVGVTPRQTCPRPEGLGRNLRSKTRWFAGFCNSHQVSHFATFFIDARAEISVAESRVD*

>peptide 4 (58 aa)
MVRGILQFTPGIAFCYVLHRCESRDIRCRESCGLRYHRCSGSGRHADHSAVQGNMSVP*

>peptide 5 (68 aa)
MREPRYPLPRVVWIKISSLLRERKACRPLRCARQHECSLTPKAPWVLLWPLCPRLEQGDLVPSQSSTT*

>peptide 6 (43 aa)
MIRFNGLLATSGAANRLRRRDPNTSPDHSIGRSDGRCVQRAGT*

>peptide 7 (39 aa)
MACFEHSNFFKVTAPEARPGQLRPGAHRRQKGRVGRFSP*

>peptide 8 (34 aa)
FPHGTCSLSVSRLYLALDGVYRPIWAAFPNNPTR*

Sequence

>CNT30369060
TTTCCCTCACGGTACTTGTTCGCTATCGGTCTCTCGCCTGTATTTAGCCTTGGACGGAGTTTACCGCCCGATTTGGGCTGCATTCCCAAACAACCCGACT
CGTTGACGGCGCCTCGTGGTGCGGCAGGGTCCGGACTACAATTCAGGTGACGAAGCCACCCGATTCTCAAGCTGGGCTGGTCCCGGTTCGCTCGCCGTTA
CTAGGGGAATCCTTGTAAGTTTCTTCTCCTCCGCTTATTTATATGCTTAAACTCAGCGGGTGGTCCCGACTGACCTGGGTGTCTGTTGGCGTGACGCCCA
GGCAGACGTGCCCTCGGCCGGAAGGCCTCGGGCGCAACTTGCGTTCAAAAACTCGATGGTTCGCGGGATTCTGCAATTCACACCAGGTATCGCATTTTGC
TACGTTCTTCATCGATGCGAGAGCCGAGATATCCGTTGCCGAGAGTCGTGTGGATTAAGATATCATCGCTGCTCAGGGAGCGGAAGGCATGCCGACCACT
CCGCTGTGCAAGGCAACATGAGTGTTCCTTGACGCCTAAGGCGCCGTGGGTTCTTTTGTGGCCCCTCTGCCCCAGGTTGGAGCAAGGGGACCTTGTGCCG
AGCCAAAGCTCGACGACATGAGAGACATGTTCACGGTCTGTTTTGTTTAAGGGTCACGACAATGATCCTTCCGCAGGTTCACCTACGGAAACCTTGTTAC
GACTTCTCCTTCCTCTAAATGATAAGGTTCAATGGACTTCTCGCGACGTCGGGGGCGGCGAACCGCCTTCGTCGCCGCGATCCGAACACTTCACCGGACC
ATTCAATCGGTAGGAGCGACGGGCGGTGTGTACAAAGGGCAGGGACGTAGTCAACGCGAGCTGATGACTCGCGCTTACTAGGCATTCCTCGTTGAAGACC
AACAATTGCAATGATCTATCCCCATCACGATGAAATTTCCCAAGATTACCCGGGCCTGTCGGCCAAGGCTATATACTCGTTGAATACATCAGTGTAGCGC
GCCGATGGCTTGCTTTGAGCACTCTAATTTCTTCAAAGTAACGGCGCCGGAGGCACGACCCGGCCAATTAAGGCCAGGAGCGCATCGCCGGCAGAAGGGT
CGAGTAGGTCGGTTCTCGCCGTGAGGCGGACCGGCCGACCCGGCCCAAGGTCCAACTACGAGCTTTTTAACTGCAACAACTTAAATATACGCTATTGGAG
CTGGAATTACCGCGGCTGCTGGCACCAGAC