Detailed information on CNT30450517


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30369060Saccharum spontaneumSorghum bicolor89.2654.7295.1673forward

Expression of CNT30450517

Peptides detected in this lncRNA

>peptide 1 (54 aa)
MVRGILQFTPGIAFCYVLHRCESRDIRCRESCRLRYHRCAGSGRRPTAPPRKAI*

>peptide 2 (49 aa)
MDFSRRRGRRTASVAAIRTLHRTIQSVGATGGVYKGQGRSQRELMTRAY*

>peptide 3 (31 aa)
VAPTSAHRALRHGGPNTTSLPPRVGWECLLA*

>peptide 4 (86 aa)
GSPNFGPPRPAARGTKHHVPPPSGGLGVSFGVTPKQTCPRPEGLGRNLRSTTRWFAGFCNSHQVSHFATFFIDARAEISVAESRVD*

>peptide 5 (38 aa)
MREPRYPLPRVVSIKISSLRGERKAADRSTAQGNIGVP*

>peptide 6 (43 aa)
MIRFNGLLATSGAANRLRRRDPNTSPDHSIGRSDGRCVQRAGT*

Sequence

>CNT30450517
CGGTAGCCCCAACTTCGGCCCACCGCGCCCTGCGGCACGGGGGACCAAACACCACGTCCCTCCCCCCTCGGGTGGGTTGGGAGTGTCTTTTGGCGTGACG
CCCAAGCAGACGTGCCCTCGGCCAGAAGGCCTCGGGCGCAACTTGCGTTCAACAACTCGATGGTTCGCGGGATTCTGCAATTCACACCAGGTATCGCATT
TTGCTACGTTCTTCATCGATGCGAGAGCCGAGATATCCGTTGCCGAGAGTCGTGTCGATTAAGATATCATCGCTGCGCGGGGAGCGGAAGGCGGCCGACC
GCTCCACCGCGCAAGGCAATATAGGTGTTCCTTGACGCCTAAGGCGCCGTGGGTTCTGTTGTGGCCCCTCCGCTCCAGGACGGAGCTCGGGGACCTCGTG
CCGAGCCGAAGCCCGGCGGCACGAGGGACGCGTTCACGGTCTGTTTTGTTTAAGGGTCACGACAATGATCCTTCCGCAGGTTCACCTACGGAAACCTTGT
TACGACTTCTCCTTCCTCTAAATGATAAGGTTCAATGGACTTCTCGCGACGTCGGGGGCGGCGAACCGCCTCCGTCGCCGCGATCCGAACACTTCACCGG
ACCATTCAATCGGTAGGAGCGACGGGCGGTGTGTACAAAGGGCAGGGACGTAGTCAACGCGAGCTGATGACTCGCGCTTACTAGGCATTCCTCGTTGAAG
ACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCCCAAGATTACCC