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Detailed information on CNT30557129


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONTAET000362, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30369060Panicum halliiSorghum bicolor94.7754.5591.8671reverse complement

Expression of CNT30557129

Peptides detected in this lncRNA

>peptide 1 (69 aa)
MSSGYCPTKAPCLHFVGRGPPKNPRRRRRQGTLILPCSGSFSACRACPVQCCYPNPHDSRQRISRLSHR*

>peptide 2 (56 aa)
MPSKRESSARVDYVPALCTHRPSLLPIEWSGEVFGSRRRRRFAAPDVARSPLNLII*

Sequence

>CNT30557129
TAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGATGTATTCAACGAGTATATAGCCTTGGCCGACAGGCCCGGGTAATCTT
GGGAAATTTCATCGTGATGGGGATAGATTATTGCAATTGTTGGTCTTCAACGAGGAATGCCTAGTAAGCGCGAGTCATCAGCTCGCGTTGACTACGTCCC
TGCCCTTTGTACACACCGCCCGTCGCTCCTACCGATTGAATGGTCCGGTGAAGTGTTCGGATCGCGGCGACGGAGGCGGTTCGCCGCCCCCGACGTCGCG
AGAAGTCCATTGAACCTTATCATTTAGAGGAAGGAGAAGTCGTAACAAGGTTTCCGTAGGTGAACCTGCGGAAGGATCATTGTTGTGACCCTTAAACAAA
ACAGACCGTGAACGTGTCATCCATGTCGTCGGGCTACTGTCCGACCAAGGCCCCTTGCCTTCATTTTGTTGGACGGGGGCCGCCAAAGAACCCACGGCGC
CGAAGGCGTCAAGGAACACTGATATTGCCTTGCTCGGGGTCATTCTCGGCTTGCCGCGCATGCCCCGTGCAATGTTGCTATCCTAATCCACACGACTCTC
GGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCAAAATGCGATACCTGGTGTGAATTGCAGAATCCCGCGAACCATTGAGTTTTTGAACGC
AAGTTGCG