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Detailed information on CNT30365038


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30462400Sorghum bicolorSaccharum spontaneum92.5337.3394.88508forward
CNT30345066Sorghum bicolorEragrostis tef42.8142.5791.49235forward

Expression of CNT30365038

Peptides detected in this lncRNA

>peptide 1 (48 aa)
GVVLEHATSFCDLYRINLYLRPYEFEIGLYVNFESCGMSNSKPNSLVH*

>peptide 2 (54 aa)
MPSLAAAASPSPVYLPSCARELALARSSSASCAAFTFSGLPPHVLRQVFCSALA*

Sequence

>CNT30365038
GGGAGTGGTGCTCGAGCATGCTACAAGTTTCTGTGATCTATATAGAATCAATTTATATCTTCGACCCTATGAATTTGAGATAGGCTTATATGTCAACTTT
GAAAGTTGTGGAATGTCAAATTCCAAGCCAAATAGCCTAGTCCACTAAGTAGATTCCAATTCCTCCAAATGAAATGTAATCAGGCCTCAAGGTAGTAGTG
AAATTGCAGTGTACTTTTCCAGCTGAACCTGTAATGGCAGACTGCCTACAGTGCCCCCGAGGAACGTACTAGCAGCAGTGGTATCATCGTCTTAGTAGCT
GTAGTTCTTGACGAACATGCCCTCCTTGGCGGCAGCGGCCTCACCATCGCCGGTGTACTTGCCGAGCTGTGCCAGGGAATTGGCCTTGGCGCGCAGCAGC
AGCGCGTCCTGTGCTGCCTTCACGTTCTCAGGCCTGCCTCCCCATGTCTTGAGGCAGGTGTTCTGCAGCGCCCTAGCGTAGGAGAATGACACATGCCACG
GGTTGGGGCTCTGGTTCATGGCGTGAAAGATGAGATCAGGTGCTACCCT