Detailed information on CNT30345066


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30677406Eragrostis tefSetaria viridis38.9537.8591.63215forward
CNT30381342Eragrostis tefManihot esculenta40.427.682.06223forward
CNT30708916Eragrostis tefGlycine max27.5463.0782.89152forward
CNT30462400Eragrostis tefSaccharum spontaneum51.8121.0191.61286forward
CNT30610723Eragrostis tefGossypium raimondii40.443.2279.82223forward
CNT30207455Eragrostis tefHelianthus annuus40.433.7478.92223forward
CNT30365038Eragrostis tefSorghum bicolor42.5742.8191.49235forward
CNT30581883Eragrostis tefEchinochloa crusgalli51.8150.3584.62286forward
CNT30334895Eragrostis tefCynara cardunculus24.6433.4283.09136forward

Expression of CNT30345066

Peptides detected in this lncRNA

>peptide 1 (44 aa)
MPSLASAASPSLCTCRAEPGSWPWRAAAARPAPPSSSRAGHPMS*

>peptide 2 (47 aa)
EYNIPITYILICKICSNQIHISHRHLSTHVCPQNTDGRQGNKALEIM*

>peptide 3 (29 aa)
MPRVGALVHGVQVLGSLHLRLATRQELQVF

Sequence

>CNT30345066
TAGAATATAATATTCCAATCACATACATATTAATATGCAAAATTTGCAGTAACCAAATCCACATTTCACATAGACATTTGTCTACTCATGTTTGTCCGCA
AAATACAGACGGCAGACAAGGTAACAAGGCTCTAGAAATCATGTGAATGCAGTAACATTCCAAGTTTCCCACTTAGTAGGGTGGTAAAAAACGCAGTGTA
TTTTGTCCATCTGAACCTGTAACTGCCTACAGTGCCCTCAAGGTGCTAGCAGTGTATCATCTTAGTAGCTGTAGTTCTTGACGAACATGCCCTCCTTGGC
CTCAGCAGCCTCACCGTCGCTGTGTACTTGCCGAGCTGAGCCAGGGAGTTGGCCTTGGCGCGCAGCAGCAGCGCGTCCTGCGCCGCCTTCAAGTTCTCGG
GCCGGCCACCCCATGTCTTGAGGCAGGTGTTCTGGAGAGCCCTGGCGTAGGAGAAGGACACATGCCACGGGTTGGCGCCCTGGTTCATGGCGTTCAAGTT
CTGGGTAGCCTCCACCTCAGACTGGCCACCAGACAGGAACTGCAGGTTTTTT