Detailed information on CNT30361422


BLAST search results

BLAST vs Swiss-Prot:
sp|P33628|TBA_PICAB, E-value = 1e-39

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30377837Sorghum bicolorArabidopsis thaliana11.0727.3482.41108forward
CNT30229091Sorghum bicolorAnanas comosus10.6629.0583.65104forward

Expression of CNT30361422

Peptides detected in this lncRNA

>peptide 1 (63 aa)
MEKLTVCPGLHLVNHSGLQVDKQGPWNVLPCARFTEECVECIPRNPNRVVTASKQPRLRNWML*

>peptide 2 (48 aa)
MNIPGLSPKYNLFEAMLQEPRSQPYLKQLSELESSEIDQNSTEFLRKDE

>peptide 3 (34 aa)
MSRDLLHMSYIASLSRSTTTSVCSIRECVESTLL*

>peptide 4 (31 aa)
MVSEGYISVCKLCLIARINGVLLTDTGNGSG*

>peptide 5 (29 aa)
MPRSSPRQSQWAPSRQTRPLERASLRSFH*

Sequence

>CNT30361422
CTCCACTGAGATAATTGGAGCATATGAAGAGAGCATGAAGTGTATCCGGGGATAAGGAACAAGGTTGGTCTGGAACTCAGTTATGTCAACATTAATGGCT
CCGTCAAACCTCAGTGACGTGGTTAGAGATGATATAACTTGAGATATAAGCCTGTTCAGATTGGTGTATGTTGGACGCTCAATGTCAAGGGACCTCTTGC
ATATGTCATATATAGCTTCATTGTCAAGAAGCACAACAACATCGGTGTGTTCAATCAGGGAATGTGTGGAGAGCACGCTGTTATAAGGCTCGACCACAGC
AGTTGAGATCTGCAACAGGAAATGGTTTCAGTACAGAGTTCTTGTAAGTTACAATGACAGGTGGATGGTCAGTGAAGGATATATTTCTGTATGCAAGCTA
TGTCTTATTGCAAGAATAAATGGAGTTCTTCTCACTGACACAGGAAATGGCTCAGGGTGAGGGACAACATGTCACACCTGTGTAATGTCCACGGGCAAAG
TTGTTTGCAGCATCTTCCTTGTGTGAGATGAGCTGCTCAGGATGGAAAAGCTGACGGTATGCCCCGGTCTTCACCTCGTCAATCACAGTGGGCTCCAAGT
CGACAAACAAGGCCCTTGGAACGTGCTTCCCTGCGCTCGTTTCACTGAAGAATGTGTTGAATGCATCCCTCGCAACCCCAACAGAGTTGTCACTGCAAGC
AAACAGCCAAGGTTGAGAAATTGGATGCTGTAAAATAGGGGTGCCATCAACTCGTAAAAAAAGAGCATCCAGCAAAGTTTCTCTAGCTTTTACTTCGGGC
TGTGATACACAAGATTGTCCTCAGGATTATGAATATTCCAGGATTATCTCCAAAATACAACCTTTTTGAGGCTATGCTACAAGAACCCAGAAGTCAGCCC
TATCTGAAACAATTATCTGAGCTAGAATCATCTGAGATAGATCAAAACTCGACTGAATTCTTAAGGAAGGATGAGA