« Back to Arabidopsis thaliana search


Detailed information on CNT30377837


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONGMAT000219, E-value = 2e-20

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30451548Arabidopsis thalianaSaccharum spontaneum84.8117.682.99335forward
CNT30229091Arabidopsis thalianaAnanas comosus37.4741.3482.43148forward
CNT30361422Arabidopsis thalianaSorghum bicolor27.3411.0782.41108forward
CNT30360524Arabidopsis thalianaLactuca sativa60.5137.2980.75239forward
CNT3056297Arabidopsis thalianaAmborella trichopoda30.6337.6982.64121forward
CNT30106557Arabidopsis thalianaOryza longistaminata30.1355.6180.67119forward
CNT30333509Arabidopsis thalianaCynara cardunculus67.0948.1883.4265forward

Expression of CNT30377837

Peptides detected in this lncRNA

>peptide 1 (30 aa)
MDTGIWDKIGLELSDIHVDGTIKPQRCCQG*

>peptide 2 (56 aa)
FVLMVPTAALTSLGTTSPRYIKQQAMYFPCLGSHFAIMLAGSKTALVISGTDSCSW*

>peptide 3 (46 aa)
MKWIRGYGTRLVWNSVISTLMAPSNLKDVVKDEMICDINLFKFGMR*

>peptide 4 (51 aa)
LCLDGANSSINIFGNNISSVHQTTGHVLSVSRVTLCHHASWLKNGIGDLRD*

Sequence

>CNT30377837
CTTTGTCTTGATGGTGCCAACAGCAGCATTAACATCTTTGGGAACAACATCTCCTCGGTACATCAAACAACAGGCCATGTACTTTCCGTGTCTCGGGTCA
CACTTTGCCATCATGCTAGCTGGCTCAAAAACGGCATTGGTGATCTCAGGGACTGATAGCTGCTCGTGGTAAGCCTTGGCGGCTGAGATGACTGGTGCAT
AAGATGACAGCATGAAATGGATACGGGGATATGGGACAAGATTGGTCTGGAACTCAGTGATATCCACGTTGATGGCACCATCAAACCTCAAAGATGTTGT
CAAGGATGAAATGATCTGTGATATCAACCTGTTCAAGTTTGGAATGCGTTGAGAGAACACTGTTGTAAGGTTCTACAACAGCAGTAGAAACCTGA