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Detailed information on CNT30348035


BLAST search results

BLAST vs Swiss-Prot:
sp|Q01595|CCDP_MAIZE, E-value = 1e-45

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30596962Eragrostis tefOryza meridionalis30.229.1488.38241forward
CNT30371146Eragrostis tefOryza glumipatula30.229.8689.21241forward

Expression of CNT30348035

Peptides detected in this lncRNA

>peptide 1 (32 aa)
MILEHEASSSCSDQVLLSALGWFAGGAWAWYL*

>peptide 2 (49 aa)
MRLRSMGRLRLRSMGRLRLMPSTLALMAVQRQTAASRSTSPPSSEQHGS*

>peptide 3 (39 aa)
MDTITNGSTTPCVNKITKMGWKKICNEKLIRSCNGRARH*

Sequence

>CNT30348035
AGCACTTTTTCGATAATCAACAAACACATACCGTCTTACATTGAATGGACACAATTACAAATGGTAGTACAACTCCATGCGTGAACAAAATTACAAAGAT
GGGGTGGAAAAAAATCTGTAACGAGAAACTTATTCGATCGTGCAACGGCCGAGCTAGACATTAAGCCAGCTGCCGCTGCAAGAATGAAATCGACTTTGGG
AAGAACACGCGACAGAGAGCACAAGCATGCACATTTGGTACGTAGCTCCTCATCAGCTTAGTTGGGGCACTTGAAGTCTTCAGGGCAGTACTTGCCGCAG
TTGTTGAGGATGAGGCTGAGGTCGATGGGCAGGTTGAGGCTGAGGTCGATGGGCAGGTTGAGGTTGATGCCGAGCACGTTGGCCTTGATGGCGGTGCAGA
GGCAGACGGCGGCGTCCAGGTCCACGAGCCCGCCCAGCAGCGAGCAGCATGGCTCGTAGCGCGGCAGGCCCACCTTGACGAGGCCCAGCACGTTGGCGCA
CACGTTCAGCTTCAGCGCGTCGATTGGGCACTTGCCGTGTCCGCGGGTCGGAGGCGTCGGCACCACCGGCGGCCGCGGCTTGGGGACAACCGGGCCTTGG
CAGTCGGATCCGCAGCCGTGCGCGGCCGCCGCAAAGAGGAGGCTCAGAGCAAGGAAGAGAGCGAGCTTGGGAGCCATTGATGATCCTAGAGCACGAAGCA
AGCAGTAGCTGTAGTGATCAAGTGCTACTGAGTGCTTTGGGATGGTTTGCTGGAGGTGCCTGGGCGTGGTATTTATAGCTGATCAAGTGGTCAGTGAG