CANTATAdb - search

Detailed information on CNT30347347

BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30368632	Eragrostis tef	Sorghum bicolor	20.39	31.75	90.35	114	forward
CNT30583267	Eragrostis tef	Echinochloa crusgalli	23.79	8.29	87.22	133	forward

Expression of CNT30347347

Peptides detected in this lncRNA

>peptide 1 (45 aa)
MASQSISQDGNLLRLSAADSSHGASVKSRLAISGSGGAGCCCCCDD

Sequence

>CNT30347347
GGAGACCCAACAGTAGGCGGCTTGAAGCAAGAACAGAGCGAGAGACAGAGACAATTACACAGTGACTAGTAAAATTTTCCATTTAATCAGTAACCAACAG
TTACATTACACTTACAACGCTCAACTGGCCTTGCCGGAGGAGAAAAAACAGTACCGGCGAAGCAACCAGGAGACAAACTACGTACACGACACTAATTGAC
AACCTTAATAATCATAATACAATACTCCATGACCGAATGCAAAAGCTTAAGCTTAAACCTCTAGGCCCTTAAACCCTACTCGCAGCCGCGGCGGGCGGCG
TCTAATATTCCATCGATCCGGTGCGGCTACGGATTAACTCAATAGTAATTAATTCGAATTAATAGCTAGATTACACTGCTTGATTGATCATCATCTGCTT
GTCTCTGCTGATCACGAGAGGATGGCGTCCCAGTCGATCTCCCAAGACGGGAACTTGCTGAGGTTGAGCGCGGCGGACTCGTCCCACGGCGCCTCGGTGA
AGTCCAGGCTCGCCATCTCGGGGAGCGGCGGCGCCGGCTGCTGCTGCTGCTGCGACGAC