Detailed information on CNT30583267


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9LM15|RA213_ARATH, E-value = 2e-06

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30673611Echinochloa crusgalliSetaria viridis9.2263.5288.51148forward
CNT30347347Echinochloa crusgalliEragrostis tef8.2923.7987.22133forward
CNT30368632Echinochloa crusgalliSorghum bicolor16.8875.4982.29271forward

Expression of CNT30583267

Peptides detected in this lncRNA

>peptide 1 (57 aa)
MNNLNTTVVLLHDQIDKLDLKPSLITATSTLSSLNPTCSHGGRCLIFHRIRRRLRIN*

>peptide 2 (43 aa)
QNSNSEVTNSYIINTYTLNWPLPGEKKQPAKQPGDHYIQDTNE*

>peptide 3 (41 aa)
TKFKFRSNQQLHNKHLHPQLAFAGREKTTGEATRRSLHTGH*

>peptide 4 (41 aa)
MVFLLRERREGRRRAGGVHRLVALRRRRGRRGLGRVRGSGG*

>peptide 5 (40 aa)
MESQSISHDGYLLRCRAAAADSSHGASVKSRLAISGSGVA*

>peptide 6 (37 aa)
MSSWSEEDDEEELSWFVYKSMAAITKMSRTLGRAKIK*

Sequence

>CNT30583267
ACAAAATTCAAATTCAGAAGTAACCAACAGTTACATAATAAACACTTACACCCTCAACTGGCCTTTGCCGGGAGAGAAAAAACAACCGGCGAAGCAACCA
GGAGATCACTACATACAGGACACTAATGAATAATCTTAATACAACAGTTGTACTACTCCATGACCAAATAGACAAGCTTGACCTTAAACCCTCCTTAATC
ACCGCTACGTCGACTCTGAGCTCCTTAAACCCTACTTGCAGCCACGGCGGCCGATGTCTAATATTCCATCGGATCCGCCGCCGGCTGCGGATTAATTAAT
GAAATGCATTGACAAAAATTACAGCTCGTGATTGATCGAGCATCTGCTTGTTGGCTTGATCACGAGAGGATGGAGTCCCAGTCGATCTCCCATGACGGGT
ACTTGTTGAGGTGCAGGGCGGCGGCAGCGGACTCGTCCCACGGCGCCTCCGTGAAGTCCAGGCTCGCCATCTCCGGCAGCGGCGTCGCCTGATGGTGTTC
TTGCTGCGTGAACGCCGAGAGGGAAGGAGGCGAGCCGGCGGAGTGCACCGACTCGTCGCCCTCCGTCGTCGTCGTGGACGCCGAGGCCTTGGGCGAGTCC
GGGGCAGCGGTGGTTGAGCGCCAGCCCCTCCGCGGCGTCCACCGACGACGTCGGGTACGGCGCCGCCGGCGACGCGTACGACGACGACGAGGAGCACGGC
GGCAGAGGCGGGAGCTGCGAGAAGGAGGTGGCGGTGGGAGCGGGCGGCGGTGGCGGGAGCGCGGTGTAAGAGGAGGCGGTTGCAGGGTAGTAGTACGAAT
CTTGAGGCAAAGCAGAGGGGTAGGGGTAGGAGTAGGAGAAGGGGGAGGAAGCACTCCGGATAAAAGGTTCGAGTGCTTTCATGAGCTCCTGGTCCGAGGA
GGACGACGAGGAGGAGCTCAGCTGGTTTGTGTACAAATCTATGGCTGCCATTACGAAGATGAGCAGAACACTAGGAAGAGCTAAAATCAAGTGAAAAAAA
ACTGACCTTTTTTTGTTCCAAAAACTGAAAGAGAGCTAACTGAAAAAGAAATTTGAAAAAAGGGGGCCTGTTTCTTCTGTAAAAGCGAAGAACAGGGATG
GTTGGTGTGGTTGGTGCAGCCTGAAAGGGGGCTTAAAAACAACCCTTTTCCGGCTTGCTTGCTAGACGAAAGAAACAAAACAGAAAGAAACCAAGAAAGT
TCTACAAGAACAGACGGGAATCAATCCAGGAGAGAAAAAAGGTTCTCCGGATATCTGTTCTTCCCTACTGCCAGGAAGAGGAACACGAACAGATTGAAAC
AAAGCTCCAGCCTTCTCCGGTCACGCTTCCTTGCTAGCTCGATCAAATAGCACGCACCAGCAAGAAAGGCTTCCGGAGAAGGCCTCCTTTTCCTAGCTTC
TACAAGAAGGGTTCAGAGAACAAACCTGTCGCCACCGTGTCCGCGGTGGCTCGCCGTCGTTGTCGTCGTTGCGCTCAGCCTCACCGGGGAAGTGGAGTGG
GTTCTGGGTTGGGTTGCTGGGGAGGGGATGATGGGGAAGAGGGAGGAGAAGGGATGGGAAGGCTTGTGCGTGTGGGTGTGGGTGGTGGGGGCGGATGCGT
CTCTC