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Detailed information on CNT30345512


BLAST search results

BLAST vs Swiss-Prot:
sp|P12329|CB21_MAIZE, E-value = 9e-91

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30220296Eragrostis tefHordeum vulgare27.5939.1591.55213forward
CNT30593390Eragrostis tefEragrostis curvula16.1952.5298.4125reverse complement

Expression of CNT30345512

Peptides detected in this lncRNA

>peptide 1 (35 aa)
MVMRASPKAPTLMGVPAIAGEEIAAMVEAAIADRA*

>peptide 2 (39 aa)
MSTTWQAQMARMLCAWIRLGSRFLAKVSGSAERPAVSHP*

>peptide 3 (63 aa)
MSTNTHYWYNLPSACSILQYSYTHRYNSTYEYVRRLRYTRHPSFTLLLTCRGRSWWRRTMRCC*

Sequence

>CNT30345512
TTATTTAATTTATTGAGTCATTCATCAGGCCCATCCAGAACATGAGCACAAATACACACTACTGGTACAATCTCCCATCGGCGTGCTCCATTTTACAGTA
CTCGTACACCCACAGGTACAATAGTACATACGAATACGTACGTCGACTACGGTACACACGACATCCCAGCTTCACCTTGCTGCTCACTTGCCGGGGACGA
AGTTGGTGGCGTAGGACCATGCGTTGTTGTTGACGGGGTCGGCGAGGTGGTCAGCGAGGCCCAGCGGGTCGAAGCTGCCGCCTGGGTAGAGCGGGTCGAC
GACCTCGCCGAGCGGGCCGCCGGCGACGCGGTATCCCTCGACGGCGCCCATGAGCACGACCTGGCAGGCCCAGATGGCGAGGATGCTCTGCGCGTGGATC
AGGCTCGGCTCCCGGTTCTTGGCGAAGGTCTCGGGGTCGGCGGAGAGGCCGGCCGTGTCCCACCCGTAGTCGCCGGGGAACTCGCCGGTCAGGTAGCTCG
GGGGCTCGCCGGAGAAGGGGCCCAGGTACTTGACGCGGTCGGGGCCGTACCACGGGCTGCCGGACGCCGCCACCTTGGGCTTGGCCGCGGTCTTGCGCAT
GGTGATGCGGGCCTCGCCGAAGGCGCCCACCTTGATGGGGGTGCCGGCCATCGCCGGGGAGGAGATCGCAGCCATGGTGGAGGCAGCCATTGCTGATCGA
GCGTGAGCTGATGAGAGAGTGTGCTAGCTAGCTGTGCGATGAGTGTGCCGGAGCGGGCGACGCGGGCTAAAT