CANTATAdb - search

Detailed information on CNT30220296

BLAST search results

BLAST vs Swiss-Prot:
sp|P08963|CB22_HORVU, E-value = 1e-40

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30589999	Hordeum vulgare	Musa acuminata	40.07	40.45	87.61	218	forward
CNT30345512	Hordeum vulgare	Eragrostis tef	39.15	27.59	91.55	213	forward

Expression of CNT30220296

Peptides detected in this lncRNA

>peptide 1 (41 aa)
MSTTWQAQMARMLCAWTRLGAPSRWSPLLQGDSCVSGVRAR*

>peptide 2 (45 aa)
MIISSLIKSNNSLLHSTLVLYIMVVQTKPAAHFIAYVRALSVSRH*

Sequence

>CNT30220296
CAAGATCAACTAGCTGTTAAATAACACAGGTGATTGCATGCATGCTCTGGTGCATCATAAGAGATGATCATCTCATCACTCATCAAGTCTAACAATAGTC
TTTTGCATTCAACCCTCGTACTTTACATCATGGTTGTACAAACGAAACCAGCTGCACACTTCATCGCGTACGTACGTGCACTGTCGGTTTCTAGACACTA
GTGGTGACAACACACGTAGCTTACTTGCCGGGCACAAAGTTGGTGGCGAAGGCCCACGCGTTGTTGTTGACGGGGTCGGCAAGGTGGTCGGCGAGGCCGA
GGGGGTCGAAGCTACCACCGGGGTAGAGGGGGTCGACGATCTCGCCGAGCGGGCCGCCGGCGACACGGTAGCCCTCGACGGCGCCCATGAGCACGACCTG
GCAAGCCCAGATGGCGAGGATGCTCTGTGCGTGGACGAGGCTGGGAGCGCCATCGCGGTGGTCGCCATTGCTTCAAGGAGACTCGTGCGTGTCCGGTGTG
CGTGCTCGCTAACAGTGGGGCTGTGGTGGTGTATGGCGGGATGG