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Detailed information on CNT30311134


BLAST search results

BLAST vs Swiss-Prot:
sp|P0CH32|UBQ4_ARATH, E-value = 0.0

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30605652Camelina sativaGossypium raimondii65.290.0683.33888forward
CNT3050777Camelina sativaCucumis sativus62.7888.0583.74855forward

Expression of CNT30311134

Peptides detected in this lncRNA

>peptide 1 (33 aa)
MKQGTTHKLNQVKRITSQVHGTRTTTFNQITEA*

>peptide 2 (49 aa)
MGLEPPLLIRSQKLRSFHHEDEEPSEELIPSGYCNLQVCDHPRAAFQRR*

>peptide 3 (31 aa)
MVSELSTSRVMVLPVKVLTKICIPPRRRSTR*

>peptide 4 (28 aa)
MPSLSWIFALTLSMVSELSTSRVMVLPVS

Sequence

>CNT30311134
ATTAGACTTCTAGTTTCTAAGGAAACAGATGATTAACATGCACTTGGATTATTTTTACTGAAAGTTGAAACACAAAGGCCCCTTACGAGCCCAACCAAAA
GGTTCATACGAAAATAAAAGAAAAGCAGAAAAATATGAAACAAGGAACAACACACAAACTAAACCAAGTGAAGAGGATCACCTCCCAAGTGCATGGGACT
CGAACCACCACTTTTAATCAGATCACAGAAGCTTAGAAGCTTCCACCACGAAGACGAAGAACCAAGTGAAGAGTTGATTCCTTCTGGATATTGTAATCTG
CAAGTGTGCGACCATCCTCGAGCTGCTTTCCAGCGAAGATGAGTCTCTGCTGATCCGGGGGAATTCCCTCCTTGTCTTGGATCTTGGCTTTGACATTGTC
AATGGTGTCTGAGCTCTCAACCTCGAGGGTGATGGTTTTGCCAGTCAAAGTCTTGACAAAGATCTGCATACCACCACGGAGACGAAGCACAAGGTGAAGG
GTCGACTCCTTTTGGATGTTGTAATCTGCGAGTGTGCGACCATCCTCGAGCTGCTTCCCAGCGAAAATGAGTCTCTGCTGATCCGGAGGGATCCCTTCCT
TGTCCTGAATCTTAGCCTTGACATTATCAATTGTGTCTGAGCTCTCAACCTCCAAGGTAATAGTCTTGCCTGTCAAGGTCTTCACAAATATTTGCATACC
ACCACGTAGACGCAAAACAAGGTGAAGGGTGGACTCCTTTTGGATGTTGTAATCCGCTAGGGTGCGTCCATCTTCGAGCTGCTTCCCAGCAAAGATGAGT
CTCTGCTGGTCTGGTGGGATCCCTTCCTTGTCCTGAATCTTGGCTTTGACATTGTCAATTGTGTCTGAGCTCTCAACCTCGAGGGTGATGGTTTTGCCAG
TCAAAGTCTTGACAAAGATTTGCATACCACCACGAAGACGAAGGACAAGGTGAAGGGTCGACTCCTTTTGGATGTTGTAATCAGCAAGAGTCCTCCCGTC
TTCAAGCTGCTTGCCGGCAAAGATAAGCCTCTGCTGATCCGGAGGGATTCCTTCCTTATCCTGGATCTTAGCCTTGACGTTGTCAATAGTGTCAGAGCTC
TCAACCTCCAAAGTAATAGTCTTGCCGGTAAGAGTCTTGACAAAGATCTGCATACCACCTCTCAAACGAAGAACCAAGTGGAGGGTCGACTCCTTCTGAA
TGTTGTAATCAGCCAAGGTACGGCCATCTTCAAGCTGTTTACCGGCGAAGATCAATCTCTGCTGGTCCGGAGGAATGCCTTCCTTGTCCTGGATCTTTGC
CTTGACATTGTCGATGGTGTCAGAGCTCTCAACCTCGAGAGTAATGGTCTTGCCAGTGAGTG