Detailed information on CNT3031084


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT3042813Theobroma cacaoPrunus dulcis61.7748.3583.71307forward
CNT3090559Theobroma cacaoSolanum tuberosum53.9238.2380.6268forward

Expression of CNT3031084

Peptides detected in this lncRNA

>peptide 1 (60 aa)
LDACFDKTSTTDMPMKVCSCEVIVLKKTFSGFFSSSAYSGVPFSGMSLRLSVGRFGEKPA*

>peptide 2 (54 aa)
MTHLSQFLPPGLNFSVLLNHFIRLVVEGAIVSHPFFNRKPDFQPINSIWIVFNQ*

>peptide 3 (69 aa)
MAHLSCHHDPPLAVPSTRLELQRLVEPFHPSCSRRSNSLSPIFQSQTRFSTHQQHMDSLQSVAEDHVGNL

>peptide 4 (33 aa)
MESRSNPYDNGARFYQLFTICILGHHGSSFLSP*

Sequence

>CNT3031084
TCCTTGATGCGTGCTTTGACAAAACTTCTACCACAGACATGCCAATGAAGGTTTGTAGCTGCGAAGTAATTGTTCTGAAGAAAACCTTCTCGGGGTTTTT
CTCAAGTTCAGCATATTCAGGAGTGCCTTTCTCAGGCATGAGCCTGCGGCTTAGTGTTGGACGGTTTGGGGAGAAGCCTGCATAGGCGAATTGTCCGAAG
TTGACAGCTGCATGGAGAGCAGAAGCAATCCATATGATAATGGTGCAAGATTCTATCAGCTCTTCACGATTTGCATTTTAGGCCACCATGGCTCATCTTT
CTTGTCACCATGACCCACCTCTCGCAGTTCCTTCCACCAGGCTTGAACTTCAGCGTCTTGTTGAACCATTTCATCCGTCTTGTAGTAGAAGGAGCAATAG
TCTCTCACCCATTTTTCAATCGCAAACCAGATTTTCAACCCATCAACAGCATATGGATAGTCTTCAATCAGTAGCCGAAGACCATGTAGGGAATTTG