Detailed information on CNT30310213


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9SEZ3|CDF5_ARATH, E-value = 3e-55

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30371589Camelina sativaArabidopsis thaliana88.0982.6387.92414forward
CNT3059989Camelina sativaArabidopsis lyrata74.8969.1688.35352forward
CNT3076249Camelina sativaBrassica juncea22.5541.4191.51106forward
CNT30263358Camelina sativaBrassica rapa22.9820.3491.67108forward

Expression of CNT30310213

Peptides detected in this lncRNA

>peptide 1 (46 aa)
NTMERNIYNSKNISLCDTTVLYLLLVRNNKISTQRFLLPQGFACRL*

Sequence

>CNT30310213
ATAACACAATGGAGAGAAATATCTACAACTCCAAAAATATTTCTCTTTGTGATACAACAGTACTATATCTACTCTTAGTACGAAACAACAAAATATCTAC
ACAGCGTTTCCTTCTTCCACAAGGGTTTGCTTGTAGACTGTAAGAAGGTTCAGCGACGACAAAGCTTCTTGTGTTGCTGTTACCCTTTGTGTCAAATCCA
TTGAACAAACTGAACCCTTGCGTTTTTTTCTCGGGTTTTGTTGGTAACTTAGACCACACCGCGCTCTTAGTAGCTTCACTATTCATTCTAAGTGATTCTG
AAGCCAATCTTGCTCTTGTAGTAGAAGTTGTTGTAGTATTATTGATCCCTCCGTCAGTTTGATGATCCCTTGACCGTTTTCCTAAACATGGTGAAGTCTC
TGAGGTAGGACATATGGGAACCGTACAGCCCCAATAGAAAGGGATAGGGTAGAAATTAGCATTAGGACCC