CANTATAdb - search

Detailed information on CNT30263358

BLAST search results

BLAST vs Swiss-Prot:
sp|Q9SEZ3|CDF5_ARATH, E-value = 7e-78

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30373410	Brassica rapa	Arabidopsis thaliana	38.79	19.54	88.83	206	forward
CNT30310213	Brassica rapa	Camelina sativa	20.34	22.98	91.67	108	forward
CNT3059989	Brassica rapa	Arabidopsis lyrata	29.38	30.65	89.74	156	forward
CNT3076249	Brassica rapa	Brassica juncea	48.21	100	99.61	256	forward
CNT30479795	Brassica rapa	Arabidopsis halleri	22.6	56.34	92.5	120	forward

Expression of CNT30263358

Peptides detected in this lncRNA

>peptide 1 (29 aa)
NISTCVQIIHSSKSKISTLLLPSFTRLCW*

Sequence

>CNT30263358
AAAATATTTCTACTTGTGTACAAATAATACATAGTTCCAAAAGCAAAATATCTACACTACTTTTGCCTTCTTTCACAAGGCTTTGTTGGTAACTCAGGGT
ACACCACGTTCTTAGTAGCTTCACTAGTTCTAAGAGTAGTATTTTTGGTTTCTACTTCAGTTTGATCCCTTGCTCGTTTCCCTAAACATGGTGAAGTCTC
TGAGATAGGCCATATAGGAACCGTGCAGCCCCAATAGAAAGGGATAGGGTAGAAACTAGTATTAGGACCCGTTGGACTCCATTGGTAAGGCCAAGGAGAA
GTATTATTAGGTAACATTACTTGGGAAGCAAGAAACTCTTGGTGGGTTTTGTTTTCTTGATGCTTAACAGTCTCTGTAACCGAAGACTCTGAAGAACCAA
AACTGAGGATCGTTCCCGAGTTATTGTTGTTCTCATAATCCTCAGACGTGACCTTCAAGTAATGGTTTGAACAAGGCCACCCTTTGTTCTTGCGGCGGCC
TGATCCAACGGGGACGTTTCTCATGGATCCA