« Back to Oryza meridionalis search


Detailed information on CNT30596584


BLAST search results

BLAST vs Swiss-Prot:
sp|P35793|PR13_HORVU, E-value = 3e-50

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30690438Oryza meridionalisOryza sativa17.7728.6586.27102forward
CNT30308186Oryza meridionalisTriticum aestivum17.9421.3787.38103forward
CNT30224115Oryza meridionalisHordeum vulgare27.1845.0987.82156forward
CNT30554258Oryza meridionalisOryza glaberrima25.2626.7581.38145forward
CNT30450505Oryza meridionalisSaccharum spontaneum20.5612.0783.9118forward
CNT30369249Oryza meridionalisOryza glumipatula11.529.0790.9166forward
CNT30102461Oryza meridionalisOryza rufipogon24.5619.4880.85141forward
CNT30576932Oryza meridionalisOryza barthii25.2624.2181.38145forward

Expression of CNT30596584

Peptides detected in this lncRNA

>peptide 1 (66 aa)
FAVDVARRRVVAGDEDAEVAVADDAGAADRRRVAPHHLRVVPARAPLRRRAAVAAVVVPLLLRHPR*

Sequence

>CNT30596584
TTTGCCGTCGACGTTGCCCGGCGGCGAGTAGTTGCAGGTGATGAAGACGCCGAGGTCGCCGTCGCAGACGACGCGGGCGCAGCCGATCGCCGTCGAGTCG
CTCCACACCACCTGCGTGTAGTGCCCGCACGAGCTCCCCTCCGGCGCCGAGCAGCTGTTGCTGCCGTGGTCGTACCACTGCTTCTCCGACACCCACGCTG
ACACGGCGTCCGCCGCCGACCAGTCGGCGCCGGCGGAGCCCCAGAAGATGTTCTCGCCGTACCTCCCGCCGGAGTCCGAGTGCTGCAGCGCGCAGTCGCC
GCGCCGCTGCTCCGCGTAGGACTCCGCGTACGCCGCCACCGTGTCGTCCCAGCTCACCGGCCCGACCCCGACGTCGGCCCTCGCCGCGTTGTGCGGGTCC
AGGAAGTCCTGCGCCGAGTTCTGCGCCGTCGCCGCCATGGCCGCCGCCGCGAGCACCAGCAAGCAGCAGGATAACCTGCTCCACGAACTCGCCATTAATT
GAAGCAATATACTATATATACCTCTTAATTTGATATTATAATTTGTTAGTAGATGAAGAGATGGAGATCGAGAG