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Detailed information on CNT30306711


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30226789Triticum aestivumHordeum vulgare60.6676.0492.19384forward
CNT30399552Triticum aestivumTriticum turgidum83.7383.33100530forward
CNT30722856Triticum aestivumTriticum spelta60.3590.3199.74382forward

Expression of CNT30306711

Peptides detected in this lncRNA

>peptide 1 (44 aa)
MAVVMACCSLLCVSLAAADCGCTCLAWRRHSSHLSTRLFQKPAL*

>peptide 2 (40 aa)
MYLLGMAAPFISSVNSFIPETCTLVGLLSLLLVVPGVLLS*

>peptide 3 (62 aa)
RLTSPDPYSRSYLPRVSLLVTPQCAPLSPTTPHSLPQDRRRRRRRRRSSRREKEITRAGDRP*

>peptide 4 (58 aa)
MTDLPNRMNSVLELYLLLIFGHQVFYAFAGISIIVWMLLYVDYCCVWSLICWVMPPAS*

Sequence

>CNT30306711
CGGCTAACAAGCCCAGACCCATATTCTCGAAGCTACCTTCCTAGGGTTTCGCTTCTTGTAACCCCCCAGTGCGCCCCCCTTTCTCCCACTACCCCCCACT
CCCTACCACAAGACCGCCGCCGCCGCAGGAGGAGGAGGAGAAGCAGCAGGCGCGAGAAGGAGATCACGCGAGCAGGCGACCGACCATGAGGGCCAAGTGG
AAGAAGAAGCGCATGAGGAGGCTGAAGAGGAAGCGCCGAAAGATGAGGCAGCGATCCAAGTAGGCTGATGGCGGTGGTGATGGCGTGCTGTAGCTTGCTA
TGTGTGTCTTTGGCTGCGGCTGACTGCGGATGTACTTGCTTGGCATGGCGGCGCCATTCATCTCATCTGTCAACTCGTTTATTCCAGAAACCTGCACTTT
AGTAGGCCTGTTATCGTTGCTTTTAGTTGTACCAGGAGTTCTGCTATCATGACCGATCTACCGAACCGTATGAACTCTGTTTTGGAGCTTTATTTGCTGC
TAATATTCGGCCATCAAGTATTTTATGCTTTTGCTGGCATCAGCATTATTGTCTGGATGCTCTTATATGTTGATTACTGCTGCGTGTGGAGTTTGATTTG
CTGGGTGATGCCACCTGCTTCTTGATGGTTTAG