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Detailed information on CNT3030662


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT3071772Theobroma cacaoQuercus suber26.8713.0784.19234forward
CNT30650744Theobroma cacaoRosa chinensis2422.9284.69209forward
CNT3025614Theobroma cacaoPopulus trichocarpa12.9730.3883.19113forward

Expression of CNT3030662

Peptides detected in this lncRNA

>peptide 1 (42 aa)
TGQSIYVHCVTEVGMQKLIYGVNHTQLSITCNYEWFNYSMSI*

>peptide 2 (33 aa)
DGPEHLCSLCHGSGDAEAYIWGEPHSTVYYLQL*

>peptide 3 (59 aa)
MRKKKYELVNKNVVFTRSRRIITGLTPARVSRANSSSVLQADLSSVSTQGNTHNLQVKV*

>peptide 4 (32 aa)
MEHGYFSIIPMTDELMIARIIHSSISFGQLPD*

Sequence

>CNT3030662
TGACGGGCCAGAGCATTTATGTTCATTGTGTCACGGAAGTGGGGATGCAGAAGCTTATATATGGGGTGAACCACACTCAACTGTCTATTACTTGCAATTA
TGAATGGTTCAATTACAGCATGAGTATTTAACCTGCAAACATGGTAAAGTATCTTAAATCATAGACAGCTTTCTAACTTTTGCTACATGGAGCATGGGTA
TTTCAGCATCATACCAATGACAGATGAGCTGATGATAGCCAGAATCATTCACAGCAGCATAAGCTTTGGCCAACTGCCAGACTGAACCTTCAACCCCGTC
CTCTGCTGGGGTGAAAACTTTGCTGACAGCACCATGTTTGTCGCTTTGTGGATGTGGCAAGCTCAACTCGATTGCCAATGGCTTCAGTGTGTCATCATCT
TGCAAGAAGAATAAAGTTCTGGTGGCATAAGTCTTTGTGCTAGTGGAATTTATCCGCCGCAGGATCAAGCTTGCTGGCTGGTGGAAATTCCTACAAACAT
GTTATAGTTAATTATTGAAGCAGGAGACCACAAACATTTCTCTAGATGAGGAAGAAGAAATATGAGCTAGTTAACAAGAATGTGGTGTTTACTCGGAGCC
GACGGATCATAACTGGGTTGACTCCAGCTAGAGTTTCTCGTGCAAACTCTTCATCTGTCCTCCAGGCAGACCTATCCTCTGTATCCACACAAGGCAACAC
ACATAATTTGCAAGTAAAAGTTTGAATATATCTAAGCAACAAGAATTCATGTAGCAGACCCCAGCTTGTTTGGGATTAAGGCTTAGTTGAGCTGCATTGA
GTTGCTACAACTCAGCCAAGAAATGTATGGGAAAATTCTTGTATATACCTTTGATCACAGCAGGCATTGGG