Detailed information on CNT3029924


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30699196Theobroma cacaoQuercus lobata34.0939.6284.76105reverse complement
CNT3070907Theobroma cacaoQuercus suber34.0932.8184.76105reverse complement
CNT30526715Theobroma cacaoPhaseolus vulgaris18.8320.3589.6658forward
CNT30632032Theobroma cacaoVigna unguiculata23.381284.7272reverse complement
CNT30172422Theobroma cacaoTrifolium pratense36.0435.1385.59111forward
CNT30479039Theobroma cacaoArabidopsis halleri22.7322.889070forward
CNT30726065Theobroma cacaoLupinus angustifolius23.3823.3887.572forward

Expression of CNT3029924

Peptides detected in this lncRNA

>peptide 1 (44 aa)
MSLVALKSVGHRVRLVSQSSEDFRLLAVEGQQAGAAWIRYGLVG*

Sequence

>CNT3029924
GCCGAGCTTGGTAGCGCAAGTTTGTGACCCAAGTGAGGGCATTATGGTGATGGAATGGTAATCTTACTCACCGAGTCAGATCCTAGGAGATCATGTGACT
GGCCTGCCCATTCCAAGCTTGGAGTTGAACTGTGAGACTTGAGCGAAGGCTATGAGTCTCGTGGCTCTTAAGAGTGTAGGGCACCGCGTGAGGCTGGTTT
CACAGAGCAGTGAAGATTTCCGGCTCTTGGCAGTGGAAGGACAACAGGCCGGTGCTGCTTGGATCCGATATGGCTTAGTGGGCTGATCGTAACTGGACGA
CCACCTTT