Detailed information on CNT3014405


BLAST search results

BLAST vs Swiss-Prot:
sp|P31156|METK2_PETCR, E-value = 2e-57

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30674842Zea maysSetaria viridis34.6332.1394.65187forward
CNT30522677Zea maysSetaria italica52.7832.1393.68285forward
CNT30188823Zea maysSecale cereale52.7833.6187.02285forward
CNT30303722Zea maysTriticum aestivum52.7847.0387.72285forward
CNT30508528Zea maysSolanum lycopersicum22.9623.8980.65124forward
CNT30477236Zea maysArabidopsis halleri20.3722.8781.82110forward
CNT30363315Zea maysSorghum bicolor42.2227.4796.05228forward
CNT3025721Zea maysPopulus trichocarpa30.9322.1585.03167forward
CNT30148817Zea maysBrachypodium distachyon47.5922.2387.16257forward
CNT30574675Zea maysOryza barthii33.1539.6991.62179forward

Expression of CNT3014405

Peptides detected in this lncRNA

>peptide 1 (67 aa)
RRTVLPKDMIDQNCKSLSSFSTDSKRGKKNKIPDETKLVVKIKDQRINPGAAAAAAILAGISRARRR*

>peptide 2 (29 aa)
TNSITKGYDRSKLQISQQFQYRLEKGKEK*

>peptide 3 (39 aa)
MNLLPPFLRSRLMVIIPGLKSKFSLTIFRISLSGMVPVP*

Sequence

>CNT3014405
AGACGAACAGTATTACCAAAGGATATGATAGATCAAAACTGCAAATCTCTCAGCAGTTTCAGTACAGACTCGAAAAGGGGAAAGAAAAATAAGATACCGG
ACGAGACCAAACTAGTAGTAAAGATAAAAGACCAGCGCATTAATCCTGGGGCGGCAGCAGCAGCAGCAATCCTTGCAGGTATCAGCAGAGCCAGACGAAG
ATGAACCTCATGTCCAGTGAACTTCCCAATACATTCTTAAGCGGATGCCTTCTTTAGGGGCTTGACCACCTCCCAGGTGAAGTCGGCGTCGTCACGGCCA
AAGTGGCCGTATGCGGCGGTCTTGATGAACCTGTTGCCGCCCTTCTTGAGGTCGAGGTTGATGGTGATCATCCCTGGCCTGAAGTCGAAGTTCTCCTTGA
CGATCTTTAGGATCTCCTTGTCGGGGATGGTCCCGGTGCCGTAGGAGTCGACGAACACGGACAGGGGCTCCGGCACGCCGATGGCGTAGGACACCTGCAC
GAGGCAGCGGCGGGCGAGGCCGCTGGCCACGATGCTCTTG