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Detailed information on CNT30251958


BLAST search results

BLAST vs Swiss-Prot:
sp|P12330|CB21_ORYSJ, E-value = 3e-102

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30668490Avena sativaTriticum dicoccoides56.7570.3789.68475forward
CNT30684636Avena sativaTriticum urartu71.861.8991.01601forward

Expression of CNT30251958

Peptides detected in this lncRNA

>peptide 1 (35 aa)
MVMRPSPKGEALEAFTGVPAIAGEESAMVEAAIAR*

>peptide 2 (29 aa)
MAQREWMTSSSRFLAKVSGSAERPAVSQP*

>peptide 3 (43 aa)
MAWTKNPNMENMARRPFLSSLTLSSAKASGSSARPRGSKLPPG*

Sequence

>CNT30251958
TAGTGTACAACACCAACTCCTCATCTCGACTCGCCTTAACATGATCTATCAGTGACGACACACACATGCAGCAGCAGCAGCATTCAGCAATGAAGTGGTC
GGCCAAGCGCGCGCACGACGCAGCACACGCTAGAGGTTGAGCTTACTAATAAGCTCTTACTTGCCGGGGACGAAGTTGGTGGCGAAGGCCCATGCGTTGT
TGTTGACGGGGTCGGCGAGGTGGTCGGCGAGGTTCTCGAGGGGGCCCTTGCCGGTGACGATGGCCTGGACGAAGAATCCGAACATGGAGAACATGGCGAG
GCGTCCGTTCTTGAGCTCCTTGACCTTGAGCTCGGCGAAGGCCTCCGGGTCGTCGGCGAGGCCGAGGGGGTCGAAGCTGCCTCCGGGGTAGAGCGGGTCG
ACGATCTCACCGAGCGGTCCACCGGCGACGCGGGCGCCGAGCATGGCCCAGCGGGAGTGGATGACCTCGAGCTCGCGGTTCTTGGCGAAGGTCTCGGGGT
CGGCGGAGAGGCCGGCGGTGTCCCAGCCGTAGTCGCCGGGGAACTCGCCGGTGAGGTAGCTGGGGGGCTCGCCGGAGAGCGGGCCGAGGTAGAGCACGCG
GTCGGAGCCGTACCAGGGGCTGCCGGACGCGGACACCTTGGGCTTGGCGGCCGTCTTGCGCATGGTGATGCGGCCCTCGCCGAAGGGGGAGGCCCTGGAG
GCCTTCACGGGGGTGCCGGCCATCGCCGGGGAGGAGAGCGCCATGGTGGAGGCTGCCATTGCTCGCTAGTCTGAGGTGAGGTGCTTCGAGTGAGCTCTCA
GGTAGTAGTAGTAGATGGTGGTGTGTGTTGGTGCTGT