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Detailed information on CNT30684636


BLAST search results

BLAST vs Swiss-Prot:
sp|P12331|CB22_ORYSJ, E-value = 8e-111

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30251958Triticum urartuAvena sativa61.8971.891.01601forward

Expression of CNT30684636

Peptides detected in this lncRNA

>peptide 1 (30 aa)
MSTTWQWMTSSSRFLAKVSGSADSPAVSQP*

>peptide 2 (31 aa)
RVSERQVVKQKNRDALIDLKNNQIHYTNTIL*

>peptide 3 (44 aa)
MVMRPSPKGAALEAFTGVPAIAGEESAMVAAAIARCVLAGFCFG*

>peptide 4 (43 aa)
MACTKKPNMENMARRPFLISFTLSSAKASGSSARPRGSKLPPG*

>peptide 5 (35 aa)
MQHLSVRTTQSQNGKKQRSTTTHMQQHPSAMKLSA*

Sequence

>CNT30684636
TCAGAGTTTCAGAGAGACAAGTAGTTAAGCAGAAGAACAGAGATGCCTTGATTGATCTGAAAAATAACCAGATACATTACACAAACACCATCTTGTAGTG
TACACACACCAACTCCTCATCTCGACTCGCCCTCACATGCAACATCTATCAGTCCGGACTACTCAATCTCAGAACGGGAAGAAGCAGAGATCGACGACGA
CACACATGCAGCAGCATCCATCAGCCATGAAGTTGTCGGCCTAGAGCTTGAGCTGACTGCGCTCACTTGCCGGGGACGAAGTTGGTGGCGAAGGCCCAGG
CGTTGTTGTTGACGGGGTCGGCGAGGTGGTCGGCGAGGTTCTCCAGGGGGCCCTTGCCGGTGACGATGGCCTGCACGAAGAAGCCGAACATGGAGAACAT
GGCGAGGCGGCCGTTCTTGATCTCCTTCACCTTGAGCTCCGCGAAGGCCTCGGGGTCCTCGGCGAGGCCCAGGGGGTCGAAGCTGCCGCCGGGGTAGAGC
GGGTCCACGATCTCGCCGAGCGGGCCGCCGGCGACGCGGTAGCCCTCCACGGCGCCCATGAGCACCACCTGGCAGTGGATGACCTCCAGCTCCCGGTTCT
TGGCGAAGGTCTCGGGGTCGGCGGACAGCCCCGCGGTGTCCCAGCCGTAGTCACCGGGGAACTCGCCGGTGAGGTAGCTCGGGGGGTCGCCGGAGAGCGG
GCCGAGGTAGAGCACGCGGTCGGAGCCGTACCACGGGCTGCTGGACGCCGCCACCTTGGGCTTGCCCGCCGTCTTGCGCATGGTGATGCGGCCCTCGCCG
AAGGGCGCCGCCCTGGAGGCCTTCACCGGGGTGCCGGCCATCGCCGGGGAGGAGAGCGCCATGGTCGCGGCCGCCATCGCGCGCTGCGTGCTAGCTGGCT
TTTGCTTCGGGTGAGCTGAGGCTGGCAGTGGGAGGCGCTGGTGGTCGTTGGTGCTGTGGAGTGAAGCGGGA