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Detailed information on CNT30251834


BLAST search results

BLAST vs Swiss-Prot:
sp|Q40034|EF1A2_HORVU, E-value = 4e-178

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30629687Avena sativaVigna unguiculata23.0114.1887.5280forward
CNT30147611Avena sativaBrachypodium distachyon16.5233.594.53201forward

Expression of CNT30251834

Peptides detected in this lncRNA

>peptide 1 (93 aa)
MMMTWATKLAASLAGSSLALEATYPRLISFTATFFTLKPTLSPGRASSMDSWCISTDFTSVVSPVGPKVTSIPGLITPVSTRPTGTVPIPPIL*

>peptide 2 (72 aa)
MSRTAKRPRGGYWEKVSTTMGLVGIIFTKPASPFLRNLGKASISLPERLSTLVWISENLTAMWDVWQSSTGA*

Sequence

>CNT30251834
ATAGCAGACTTTATTGTCAATTTTTAGTGATAAAAAATCACGACATGCTAGCACAAATAATATGACTCGAAATTTCTGACGTATATATAAAGAGTAGCAC
TTTAATCGAACATAGCAGACCATTGTTTCACCAACATAACCGAGAGATAGAATGATAAGCAGCACGACGGCTGGACGACGCCCATAACCAAACTCGAAAA
TACGGGGCAGTTTCCCAAATTCACTAACACGACTACCATCGCCATATACCACCACAAGGGGTGTAGTAGTGGACAACCACCGGGCACCGTCTCATTTCTT
CTTGGCGGCAGCCTTGGTCACCTTGGCACCCGTGGGGTCCTTCTTCTCCACGCTCTTGATCACACCGACAGCAACAGTCTGCCTCATGTCACGCACAGCA
AAGCGGCCAAGGGGAGGGTACTGGGAGAAGGTCTCCACCACCATGGGCTTGGTGGGAATCATCTTCACGAAGCCTGCGTCCCCATTCTTGAGGAACTTGG
GGAAGGCCTCAATCTCCTTACCGGAACGCCTGTCGACCTTGGTCTGGATCTCAGAGAACTTGACGGCGATGTGGGACGTGTGGCAGTCCAGCACTGGGGC
GTAGCCATTGCCGATCTGGCCAGGGTGGTTCATGATGATGACCTGGGCAACAAAGTTGGCAGCCTCCTTGGCAGGGTCGTCCTTGGCATTGGAGGCGACG
TACCCACGCTTGATATCCTTCACAGCCACGTTCTTCACATTGAAGCCGACGTTGTCACCTGGCAGAGCCTCCAGCATGGACTCGTGGTGCATCTCCACAG
ACTTCACCTCAGTAGTCAGTCCAGTAGGGCCAAAAGTGACAAGCATACCTGGCTTGATCACACCAGTCTCAACACGCCCCACTGGCACAGTTCCAATACC
GCCAATCTTGTAGACATCCTGAAGGGGAAGGCGGAGGGGCTTGATCACTCCAGTCTCAACACGCCCCACTGGCACAGTTCCAATGCCACCAATCTTGTAG
ACATCCTGAAGGGGAAGGCGGAGGGGCTTGTCTGAGGGCCTCTTGGGCTCATTGATCTGGTCAAGCGCCTCAAGCAAGGTTGGGCCCTTGTACCAGTCAA
GGTTGCTGGACCTCTCAATCATGTTGTCACCCTCAAAACCAGAGATGGGGACAAACGGGACCTTGTCGGGGTTGTAGCCCACCTTCTTCAAGTAGGAGCC
AACTTCCTTGACAATTT