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Detailed information on CNT30629687


BLAST search results

BLAST vs Swiss-Prot:
sp|P17786|EF1A_SOLLC, E-value = 4e-65

BLAST vs NONCODE:
NONCQUT008675, E-value = 2e-82

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30673325Vigna unguiculataSetaria viridis16.0558.2786.75317forward
CNT30546678Vigna unguiculataIpomoea triloba15.5922.988.96308forward
CNT30380125Vigna unguiculataManihot esculenta16.226.6985.62320forward
CNT3093993Vigna unguiculataSolanum tuberosum8.6632.7691.81171forward
CNT30287202Vigna unguiculataTriticum aestivum16.1544.3786.83319forward
CNT30387906Vigna unguiculataTriticum turgidum16.1532.8987.15319forward
CNT30237858Vigna unguiculataBrassica oleracea14.6864.8886.55290forward
CNT30509929Vigna unguiculataSolanum lycopersicum7.5970.0990150forward
CNT30440878Vigna unguiculataAegilops tauschii13.3733.5987.12264forward
CNT30251834Vigna unguiculataAvena sativa14.1823.0187.5280forward
CNT30614172Vigna unguiculataArabis alpina15.6530.987.38309forward
CNT30132437Vigna unguiculataLolium perenne16.226.6286.25320forward
CNT3011290Vigna unguiculataZea mays16.223.2786.56320forward
CNT30608684Vigna unguiculataGossypium raimondii8.6140.3890.59170forward
CNT3067093Vigna unguiculataLeersia perrieri8.4637.3688.62167forward
CNT30647369Vigna unguiculataRosa chinensis14.6331.988.58289forward
CNT30350899Vigna unguiculataEragrostis tef16.228.6787.19320forward
CNT30423983Vigna unguiculataPapaver somniferum22.3354.7186.85441forward
CNT3024873Vigna unguiculataPopulus trichocarpa24.5685.9987.01485forward
CNT30120727Vigna unguiculataCitrus clementina8.329.8289.02164forward
CNT30147611Vigna unguiculataBrachypodium distachyon8.8629.1789.14175forward
CNT30101053Vigna unguiculataOryza rufipogon16.238.5188.12320forward
CNT30580076Vigna unguiculataEchinochloa crusgalli16.224.1987.19320forward
CNT30116111Vigna unguiculataOryza nivara15.8535.7787.22313forward
CNT30176058Vigna unguiculataVigna angularis34.7876.0896.22687forward
CNT30726329Vigna unguiculataLupinus angustifolius15.6567.4789.32309forward
CNT3039699Vigna unguiculataMarchantia polymorpha13.0130.284.82257forward

Expression of CNT30629687

Peptides detected in this lncRNA

>peptide 1 (29 aa)
MTSGSRLPRVDMTNDHNTDVNLFLTHNCL*

>peptide 2 (31 aa)
MTSCSSQQLPSRISQSHACQFLQACRLDDQW*

>peptide 3 (30 aa)
MASHKYSPRPDKIVDFNQLKQKVHRSIHQK*

>peptide 4 (32 aa)
MPSTQIHKNQTKSSCSKARKASEKKNPFFENI*

>peptide 5 (32 aa)
MTPKNKNMHNIQKYQIVPKNKSKSKLLADIIN*

>peptide 6 (41 aa)
MHNHKKKIRGNARKRIKLWITIKLSDNIENPITKFYIVKHA*

>peptide 7 (72 aa)
MLSPSKPEIGTKGILSGLYPTFFKYEETSFTISSYLALEYLGVVAYLNDLLFISAASFSNLSITRLSIPPSL*

>peptide 8 (32 aa)
MDNHQIIGQYRKPDHKILHSKTCITIKKLDDT*

>peptide 9 (33 aa)
MTQEYKQETSIYCNHPLMNHHPARFTSSSGRPW*

Sequence

>CNT30629687
CTGATATTTAAAATGCAAACAAACAACGCAGCAAAGCGGTAAAACTTGCTGCGCTTACAAAAATGTAATCAGGGGTTCTCACAAAAACACAAAAACACAT
AAAAACACATAATAATAATAATAAAAGAGCCGCCACCGTCGATCAAGAACCCAATTCTGGGAACAAAAGTTGGGAGATGATGGTGGAAACTTCAAACTAA
GTACGAAAAACAATCTACCTAGCGATGACACAAGAGTACAAGCAAGAAACCAGCATTTATTGTAACCATCCCCTGATGAACCACCACCCAGCACGATTCA
CTTCTTCTTCTGGGCGGCCTTGGTGACCTTGGCTCCAGTAGGGTCTTTCTTCTCAACGTTCTTGATGACTCCCACAGCAACAGTCTGACGCATATCCCTC
ACAGCAAAACGTCCAAGAGGTGGGTACTCAGAGAAGGTCTCCACCACCATTGGCTTGGTTGGAATCATCTTCACGAAACCAGCATCACCATTCTTCAAGA
ACTTAGGCTTGATGACACCAGTCTCAACACGTCCCACAGGCACAGTTCCAATACCTCCAATCTTGTAGACATCCTGAAGAGGAAGCCTGAGGGGCTTGTC
AGATGGCCTCTTGGGCTCAGTGATTTGGTCAAGAGCCTCAAGCAGGGTAGGTCCCTTGTACCAGTCGAGGTTTGTGGACCTCTCAATCATGTTGTCTCCC
TCAAAACCAGAGATTGGAACAAAAGGAATCTTGTCTGGGTTGTATCCCACTTTCTTCAAATACGAGGAGACTTCCTTCACAATTTCATCATACCTAGCCT
TGGAGTACTTGGGAGTGGTGGCATACTTGAATGACCTCTTGTTCATCTCAGCAGCTTCCTTCTCGAATCTCTCAATCACACGCTTGTCAATTCCTCCAAG
CTTGTAGATTAGATGACCAGTGGTAGTCGACTTCCCAGAGTCGACATGACCAATGACCACAATACTGATGTGAACCTTTTCCTTACCCATAACTGCCTTT
GAGTATCTGCAAAAAAACAACCGTCAAAACAAGAGTTAGAATGCAAATCAATAAATAGCCACATCTAACATAAATAAGGTGAGCTTCGCCATTTGCATAA
CAAACCGTGCATAGCAATAGAAAATATCGGGTAATATCTAAAAACCAACCACATAAGTTCCACATATGAAAACATGCATAACCACAAAAAAAAAATAAGG
GGTAATGCCCGTAAAAGAATAAAACTATGGATAACCATCAAATTATCGGACAATATCGAAAACCCGATCACAAAATTTTACATAGTAAAACATGCATAAC
CATAAAAAAATTGGATGACACCTAAAAACAAAAACATGCATAACATACAAAAATATCAGATAGTACCTAAAAACAAATCCAAAAGCAAACTACTAGCGGA
TATAATCAATTAAAGCAAATCGAACGCAACACAAGCTAAATACTCACGCAGATCAAATTATAGACACGTTTAAAATAAGATACAACACCACATGCAATCA
TAATTCATGACAACCACACATTTAACATGGCATCCCATAAATACTCACCAAGACCTGATAAAATCGTCGACTTTAATCAGTTAAAACAAAAAGTTCACAG
ATCTATTCATCAGAAATAAGAAAAATCTCAAACCAAACAACAAAACGTTTACCAGATCTGGATCCAGGGATTTGAATATGCCAAGCACACAAATCCACAA
AAATCAAACCAAATCCAGTTGTTCCAAAGCTAGAAAAGCATCCGAAAAAAAAAATCCTTTTTTTGAAAACATCTAACCGATTAAAATCATCAACTCAAAC
AAAAATCAAAAAGAACATAAAATTCATGTGAAAGAATAAAACTTCATCAACAAAACTTGGATAAATTAAAGACATCAGCAATAGATACAAGAAACCATAA
GCTGCAGGCAACACAATCCAATATGATACTCATGAATCTAAGGAATAAACCTCTTAAATCGGTATAAGAGACCAT