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Detailed information on CNT30147611


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30673325Brachypodium distachyonSetaria viridis32.6736.0391.84196forward
CNT30316746Brachypodium distachyonCorylus avellana33.1740.2887.94199forward
CNT3021172Brachypodium distachyonCitrullus lanatus30.8335.2487.57185forward
CNT30629687Brachypodium distachyonVigna unguiculata29.178.8689.14175forward
CNT30505987Brachypodium distachyonNicotiana attenuata20.1736.7889.26121forward
CNT30296842Brachypodium distachyonTriticum aestivum33.528.8495.52201forward
CNT30224987Brachypodium distachyonHordeum vulgare15.6731.8697.8794forward
CNT30237858Brachypodium distachyonBrassica oleracea31.542.2891.01189forward
CNT30509929Brachypodium distachyonSolanum lycopersicum2570.0990.67150forward
CNT30440878Brachypodium distachyonAegilops tauschii33.525.5795.52201forward
CNT30251834Brachypodium distachyonAvena sativa33.516.5294.53201forward
CNT30598511Brachypodium distachyonFraxinus excelsior33.1730.5787.44199forward
CNT30203418Brachypodium distachyonHelianthus annuus2739.6185.8162forward
CNT30685109Brachypodium distachyonTriticum urartu38.8325.1194.42233forward
CNT30721805Brachypodium distachyonTriticum spelta2711.2295.06162forward
CNT30706378Brachypodium distachyonPrunus avium33.1717.6189.45199forward
CNT30644842Brachypodium distachyonCannabis sativa26.1738.8685.35157forward
CNT3024873Brachypodium distachyonPopulus trichocarpa33.1735.2888.94199forward
CNT3037774Brachypodium distachyonCucumis melo31.1724.1990.37187forward
CNT30101053Brachypodium distachyonOryza rufipogon29.8321.5494.97179forward
CNT30116111Brachypodium distachyonOryza nivara31.8321.8394.24191forward
CNT30594546Brachypodium distachyonEragrostis curvula33.542.4993.53201forward
CNT30726329Brachypodium distachyonLupinus angustifolius29.6738.8688.76178forward

Expression of CNT30147611

Peptides detected in this lncRNA

>peptide 1 (82 aa)
MTPTATVCLMSRTVPMPPILYTSWRGRRRGLSEGLLGSLIWSSASSKVGPLYQSRLVDLSIMLSPSKPEMGTKGTLSGSHSFQ

>peptide 2 (47 aa)
RTMQNSLQAAADNTKTKQKIICNQRTCIPKMSMRQQPQSTQVLTEPK*

Sequence

>CNT30147611
CGAACTATGCAGAATAGTCTGCAAGCTGCAGCAGATAACACTAAGACAAAACAGAAAATAATTTGCAACCAACGAACTTGCATTCCCAAAATGTCAATGA
GGCAACAGCCTCAGAGCACACAGGTTTTAACCGAACCGAAATAGGAATACAGTATTTAAACGACAGACATGAACATTGCTTACATAGTTTCAAGAGTCTC
AGCAATACGAGCAATGCACATAGACAAAACTTAGTAAACACTAAAACTGCAGCCAGACATCTCAATCCCCAACACAGAACAAATCATTTCTTCTTGGCAG
CCGCCTTGGTGACCTTGGCGCCGGTTGGGTCCTTCTTCTCCACACCCTTGATGACACCAACAGCAACTGTTTGTCTCATGTCACGCACAGTTCCAATGCC
ACCAATCTTGTACACGTCCTGGAGGGGAAGACGCAGGGGCTTGTCTGAGGGCCTCTTGGGCTCATTGATCTGGTCAAGTGCCTCAAGCAAGGTAGGGCCC
TTGTACCAGTCAAGGTTGGTGGACCTCTCAATCATGTTGTCACCCTCAAAACCAGAGATGGGGACGAAGGGGACCTTGTCAGGGTCTCACTCATTCCAAT