Detailed information on CNT30244143


BLAST search results

BLAST vs Swiss-Prot:
sp|P04784|CB21_WHEAT, E-value = 2e-175

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30188610Avena sativaSecale cereale81.3876.0688.12791forward
CNT30686878Avena sativaTriticum urartu81.3886.9288.24791forward

Expression of CNT30244143

Peptides detected in this lncRNA

>peptide 1 (29 aa)
MAQRLWITSNSLFFAKVSGSAESPAVSQP*

>peptide 2 (48 aa)
GSTNKTTASQSTVRIDSKTPQLLAGDKVGGECPCVVVHGIGDVVTEVL*

>peptide 3 (38 aa)
MPRGRRPGREGQSCRPGRAGQRSHLVGRQQRGTPRRHP*

>peptide 4 (61 aa)
MRASPKSVDDGRFFTTFPAKVEEETDMVVVVIGVYDRCVLFVFSWRVWRWRWFQRTHGRGI*

>peptide 5 (31 aa)
MTGVSCLCSPGECGGGGGFRGHTDVVFKGAEV

>peptide 6 (32 aa)
MARRLFLSSFTFSSANASGSSARPRGSKLPPG*

Sequence

>CNT30244143
GTGGTAGTACAAATAAGACTACAGCATCACAGTCAACCGTGAGGATAGACTCTAAGACACCTCAGTTACTTGCCGGGGACAAAGTTGGTGGCGAATGCCC
ATGCGTTGTTGTTCACGGGATCGGCGATGTGGTCACCGAGGTTCTCTAGTGGGCCCTTGCCGGTGACTATGGCTTGAACAAAGAAGCCGAACATCGAAAA
CATGGCTAGGCGACTGTTCTTGAGTTCCTTCACCTTCAGCTCAGCAAATGCCTCGGGGTCGTCGGCCAGGCCGAGAGGGTCAAAGCTGCCGCCCGGGTAG
AGCGGGTCAACGATCTCACCTAGTGGGCCGCCAGCAACGCGGTACCCCTCGACGGCACCCATGAGCACAACCTGGCAGGCCCAGATAGCGAGGATGCTTT
GTGCGTGGACGAGGCTAGGGTTGCCGAGGTAGTCGAGGCCACCCTCACTGAAGATCTGGGAGCCGGCCTTGAACCAGACAGCCTCACCAAACTTGACACC
ATTTCGGGCAAGCAACTCAGGGAAGACACATCCCAGTGCCCCGAGCATGGCCCAACGACTGTGGATCACCTCCAACTCCCTGTTCTTCGCGAAAGTCTCA
GGGTCAGCCGAAAGTCCGGCGGTGTCCCAGCCATAGTCACCGGGGAACTCACCGGTCAGGTAGCTCGGGGGCTCACCGGATAGCGGGCCGAGGTAGAGCA
CACGGTCAGCACCGTACCATGGGCTACTAGAGGAGACTTGCTTAGCCTTTGCTGCAGTCTTGCGCATCGTAATGCGGGCCTCGCCAAAAAGTGTGGACGA
TGGCAGATTCTTCACTACCTTTCCAGCGAAGGTCGAGGAGGAGACAGACATGGTGGTGGTGGTGATTGGAGTGTATGACCGGTGTGTCCTGTTTGTGTTC
TCCTGGAGAGTGTGGAGGTGGAGGTGGTTTCAGAGGACACACGGACGTGGTATTTAAGGGAGCGGAGGTGAT