Detailed information on CNT30188610


BLAST search results

BLAST vs Swiss-Prot:
sp|P04784|CB21_WHEAT, E-value = 6e-175

BLAST vs NONCODE:
NONSTUT001352, E-value = 2e-32

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30244143Secale cerealeAvena sativa76.0681.3888.12791forward
CNT30139746Secale cerealeLolium perenne75.4883.8787.26785forward

Expression of CNT30188610

Peptides detected in this lncRNA

>peptide 1 (91 aa)
MVRPMQGATWKRTNRTVLLHKILVIYIMVVQPRLHNNTLHGVHNLLDILLAGDKVGCERPCVVADRVSDVVGEVLKWALARDDSLDKEAEH*

>peptide 2 (38 aa)
MPQGLQPSQEGRSCRLGRVGRRSHRVGRRQRGTPRLHP*

>peptide 3 (57 aa)
MWSARFSSGPLPVTIAWTKKPNIENMARRPFLISFTLSSANASGSSAKPRGSKLPPG*

>peptide 4 (33 aa)
VLVNHDITTKWSDQCKARHGSGQIEPCFCTKSS*

>peptide 5 (51 aa)
MISQQNGQTNARRDMEADKSNRAFAQNPRNLHHGSTTETAQQYASRRAQSS*

>peptide 6 (50 aa)
MVTRASPKRAKDGTFFTALPAKVEEERDMVAAAIGKLRKVSAVLYGFSKR*

>peptide 7 (29 aa)
MAQRQWITSNSRFLEKVSGSAESPAVSHP*

Sequence

>CNT30188610
GTTCTCGTGAACCATGATATCACAACAAAATGGTCAGACCAATGCAAGGCGCGACATGGAAGCGGACAAATCGAACCGTGCTTTTGCACAAAATCCTCGT
AATTTACATCATGGTAGTACAACCGAGACTGCACAACAATACGCTTCACGGCGTGCACAATCTTCTTGACATCTTACTTGCCGGGGACAAAGTTGGTTGC
GAACGCCCATGCGTTGTTGCTGACAGGGTCAGCGATGTGGTCGGCGAGGTTCTCAAGTGGGCCCTTGCCCGTGACGATAGCTTGGACAAAGAAGCCGAAC
ATTGAGAACATGGCGAGGCGACCGTTCTTGATCTCCTTCACCTTGAGCTCGGCGAATGCCTCAGGGTCTTCAGCCAAGCCAAGAGGGTCGAAGCTGCCGC
CTGGGTAGAGTGGGTCGACGATCTCACCGAGTGGGCCGCCGGCAACGCGGTACCCCTCGACTGCACCCATGAGCACGACCTGGCATGCCCAAATAGCAAG
GATGCTTTGTGCGTGGACGAGACTGGGGTTGCCGAGGTAGTCGAGACCACCCTCACTAAAGATCTGGGAGCCGGCCTTGAACCAAACAGCCTCGCCGAAC
TTGACGCCGTTGCGGGCGAGCAACTCAGGGAAGACGCAACCAAGTGCACCAAGCATGGCCCAACGACAGTGGATCACCTCCAACTCCCGGTTCTTGGAGA
AGGTCTCAGGGTCAGCCGAAAGTCCGGCTGTGTCCCACCCATAGTCACCTGGGAACTCACCGGTCAAGTAGCTCGGAGGCTCACCGGAGAGTGGGCCGAG
GTAGAGCACACGGTCAGCGCCGTACCATGGGCTGCCAGAGGAAACCTGCTTCGCCTTCGTTGCGGTCTTGCGCATGGTGACTCGGGCCTCGCCAAAGAGA
GCCAAAGATGGTACATTCTTCACTGCCTTGCCGGCAAAGGTCGAGGAGGAGAGGGACATGGTGGCTGCGGCCATTGGAAAGCTAAGAAAAGTGTCCGCTG
TGTTGTATGGGTTCTCAAAGAGATGAGTGAGTGTGGAGAT