« Back to Avena sativa search


Detailed information on CNT30243199


BLAST search results

BLAST vs Swiss-Prot:
sp|P36494|CB4_SPIOL, E-value = 5e-07

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30672091Avena sativaSetaria viridis29.3738.891.07168forward
CNT30659570Avena sativaTriticum dicoccoides54.3756.7592.93311forward

Expression of CNT30243199

Peptides detected in this lncRNA

>peptide 1 (64 aa)
RKQVKIDIQVDALSHHWFIFYKSPSPSSRPRPALIKKGCFAVPSHHSSYKTKPRSYTRTRSSIL*

>peptide 2 (95 aa)
MVVCSGSLRWVAQLLSGPLPVAARVLDLRQLQGFLLLRVRRETQRVEVGAAGVQPPLRVQLSVALELDVADHQHLDPDEGRDREGQRLTQVRRPVN

>peptide 3 (48 aa)
MFRGTLSSLVIQNQTTFVHTDAFVHFVAELTEPYTLLSTTETSDRPRA*

Sequence

>CNT30243199
AAGAAAACAGGTCAAGATTGATATACAGGTGGATGCATTAAGTCACCATTGGTTCATATTTTACAAATCTCCAAGTCCCAGCAGCCGTCCTAGACCTGCA
TTAATCAAGAAAGGATGTTTCGCGGTACCCTCTCATCACTCGTCATACAAAACCAAACCACGTTCGTACACACGGACGCGTTCGTCCATTTTGTAGCCGA
GCTTACAGAACCGTATACACTGCTCTCGACCACCGAGACTAGCGACCGGCCGCGCGCTTAAGAGGAGCCCAAGGTGTCGAAGATGGTGGTGTGCAGCGGG
TCGCTGAGGTGGGTGGCCCAGTTGTTGAGTGGGCCCTTGCCGGTGGCGGCGCGCGTGCTTGATCTCCGCCAGCTGCAGGGTTTCCTTCTTCTCAGGGTCC
GCCGCGAGACCCAGCGGGTCGAAGTAGGAGCCGCCGGGGTACAGCCGCCTCTCCGGGTCCAGCTCAGCGTTGCGCTGGAACTCGATGTAGCCGATCACCA
GCACCTCGATCCAGATGAGGGTCGTGATCGTGAAGGGCAACGGCTGACCCAGGTACGAAGACCCGTCAATCA