Detailed information on CNT30672091


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30290543Setaria viridisTriticum aestivum38.5740.3484.43167forward
CNT30221643Setaria viridisHordeum vulgare19.6322.0290.5985forward
CNT30436081Setaria viridisAegilops tauschii41.835.4285.64181forward
CNT30243199Setaria viridisAvena sativa38.829.3791.07168forward
CNT30659570Setaria viridisTriticum dicoccoides40.6532.1289.77176forward
CNT30581253Setaria viridisEchinochloa crusgalli45.532.491.37197forward

Expression of CNT30672091

Peptides detected in this lncRNA

>peptide 1 (47 aa)
TSECINSSLVHILQITSPHQQALLINETSINKLSDPSSHHTLSLITK*

>peptide 2 (51 aa)
MVVWSGSLRWVAQLLSGPLPVARVLDLRQLQPLLLLRVGRQAERVEVGAARV

Sequence

>CNT30672091
ACAAGTGAATGCATTAATTCATCACTGGTTCATATATTACAAATCACAAGTCCCCATCAGCAAGCTCTCCTAATTAACGAGACCTCCATTAACAAACTAT
CGGATCCATCTTCCCACCATACCCTCTCACTCATCACAAAATGATATCACGCACGCATGGGTTCATCCATCTCCGCCAGCTGATAGAGATCACAGTTAAT
TAATTCAAGAACACGTTTCGATCGATGGACGACGGAGCAATGGCGGCTTAAGAGGATCCTCCGAACGTGTCGAAGATGGTGGTGTGGAGCGGGTCGCTGA
GGTGGGTGGCCCAGTTGTTGAGCGGGCCCTTGCCGGTGGCGCGCGTGCTTGATCTCCGCCAGCTGCAGCCGCTCCTTCTTCTCCGGGTCGGCCGCCAGGC
CGAGCGGGTCGAAGTAGGAGCCGCCCGGGTAGA