Detailed information on CNT30586204


BLAST search results

BLAST vs Swiss-Prot:
sp|P25776|ORYA_ORYSJ, E-value = 4e-33

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30221137Musa acuminataHordeum vulgare9.7624.6496.1552forward
CNT30463555Musa acuminataSaccharum spontaneum13.3222.991.5571forward
CNT30227445Musa acuminataAnanas comosus8.2620.3790.9144forward

Expression of CNT30586204

Peptides detected in this lncRNA

>peptide 1 (78 aa)
TPTTAPFSLQSIESGKSSPSLSRYRLLPSDEALLLRDAAARTPRYLARYSSLVRSANRLRPRRKACSPRSAAALWASM*

>peptide 2 (58 aa)
RRQQRPSPSNRLNQANHRRPSAGTGCCPPMRPSSCGTRRPGRLGTWPGTPRWSGRRTG*

>peptide 3 (85 aa)
MGVDVAEAKAEGVLPAVGRRVMGVDVAEVVLEHLEPARLFRERVAGRPVLGHPLQVEQTHLFLAPPGHLLAVALPAGHHVQVGDS*

Sequence

>CNT30586204
ACGCCGACAACAGCGCCCTTCTCCCTCCAATCGATTGAATCAGGCAAATCATCGCCGTCCCTCAGCCGGTACCGGTTGCTGCCCTCCGATGAGGCCCTCC
TCCTGCGGGACGCGGCGGCCCGGACGCCTAGGTACTTGGCCCGGTACTCCTCGTTGGTCAGGTCGGCGAACCGGTTGAGGCCGAGGCGGAAGGCGTGCTC
CCCGCGGTCGGCCGCCGCGTTATGGGCGTCGATGTAGCGGAGGCCAAGGCGGAAGGCGTGCTCCCCGCGGTCGGCCGCCGCGTTATGGGCGTCGATGTAG
CGGAGGTTGTCCTTGAACACCTCGAACCTGCTCGCCTCTTCCGCGAGCGCGTTGCGGGACGGCCGGTGCTTGGCCACCCACTCCAGGTAGAGCAGACGCA
CCTCTTCCTCGCTCCGCCCGGACACCTGCTCGCTGTGGCCCTCCCCGCTGGTCACCATGTACAAGTCGGGGACAGCTGAGGCGATCGCCGCCGCGGCCAA
GAGGAGAAGGAAGATGATAGCAGAAGCCATGAG